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Report for CCDS42539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42539.1 Public Homo sapiens 19 ZNF676 24 110 108 CCDS HistoryNCBI Gene:163223Re-query CCDS DB by CCDS ID:42539.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397121.3 ENSP00000380310.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397121.3Link to Ensembl Protein Viewer:ENSP00000380310.1Re-query CCDS DB by Nucleotide ID:ENST00000397121Re-query CCDS DB by Protein ID:ENSP00000380310
Original member Current member NCBI NM_001001411.3 NP_001001411.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001411.3Link to Protein Sequence:NP_001001411.2Re-query CCDS DB by Nucleotide ID:NM_001001411Re-query CCDS DB by Protein ID:NP_001001411Link to BLAST:NP_001001411.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001411.2 588 Q8N7Q3 588 100% 0 0

Chromosomal Locations for CCDS 42539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 22179950 22181586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22193016 22193111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22196600 22196633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGTTAGAGAACTACAGAAACCTGGTCTTCCTGGGTATTGCTGCCTTTAAGCCAGACCTGATCATTTTTC
TGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTGGAAGAACCCCCAGTTATATGTTC
TCATTTTTCCCAAGAGTTTTGGCCAGAGCAAGGCATAGAAGATTCTTTCCAAAAAATGATATTGAGAAGA
TATGACAAATGTGGACATGAGAATTTACACTTAAAAATTAGTTGTACCAATGTGGATGAGTGTAACGTGC
ACAAAGAAGGTTATAATAAACTTAACCAGAGTTTAACAACTACACAGAGCAAAGTATTTCAATGTGGCAA
ATATGCAAACGTCTTTCATAAATGTTCAAATTCAAACAGACATAAGATAAGGCATACTGGAGAGAAAGGT
TTGAAATGTAAAGAATATGTCAGATCATTTTGCATGCTTTCACACCTATCTCAACATGAAAGAATTTATA
CTAGAGAGAATTCCTACAAATGTGAAGAAAATGGCAAAGCTTTTAACTGGTCCTCAACCCTTACTTATTA
TAAGAGTATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGTAAGTTCTCA
ATCCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTT
TTAATCGATCCTCAATCCTTACTAAACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGAAGA
ATGTGGCAAAGGATTTAGTAGCGTCTCAACCCTTAATACACATAAGGCAATTCATGCTGAAGAGAAGCCC
TACAAATGTGAAGAATGTGGCAAAGCTTCCAACTCGTCCTCAAAGCTCATGGAACATAAGAGAATTCATA
CTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCAAAGCCTTCAGCTGGTCCTCAAGCCTTACTGAACA
CAAGAGAATTCATGCTGGAGAGAAACCCTACAAATGTGAAGAATGCGGGAAAGCTTTTAATCGATCCTCA
ATCCTTACTAAACATAAGATTATTCATACTGGAGAGAAACCCTACAAATGTGAAGGATGTGGCAAAGCCT
TTAGTAAGGTCTCAACCCTTAATACACATAAGGCAATTCATGCTGAAGAGAAGCCCTACAAATGTGAAGA
ATGTGGCAAAGCTTCCAACTCATCCTCAAAGCTCATGGAACATAAGAGAATTCATACTGGAGAGAAACCC
TACAAGTGTGAAGAATGTGGCAAAGCCTTCAGCTGGTCCTCAAGCCTTACTGAACACAAGAGAATTCATG
CTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTCACCTGGTCCTCAAGCTTTACTAAACA
CAAGAGAATTCATGCTGCAGAGAAACCTTACAAATGTGAAGAATGTGGCAAAGGCTTTAGTACGTTCTCA
ATCCTTACTAAACATAAGATAATTCATACTGGAGAGAAACGCTACAAATGTGAAGAATGTGGCAAAGCCT
TCAGCTGGTCCTCGATCCTTACTGAACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGAAGA
ATGTGGCAAAGCCTTCAGCAGATCCTCAAGCCTTACTAGACACAAGAGAATTCATACTGGAGAGAAACCC
TACAAATGTGAAGAATGTGGCAAAGCTTTTAAGTCATCCTCAACTGTTAGTTATCATAAGAAAATTCATA
CTGGAGAGAATCCCTAA

Translation (588 aa):
MLENYRNLVFLGIAAFKPDLIIFLEQGKEPWNMKRHEMVEEPPVICSHFSQEFWPEQGIEDSFQKMILRR
YDKCGHENLHLKISCTNVDECNVHKEGYNKLNQSLTTTQSKVFQCGKYANVFHKCSNSNRHKIRHTGEKG
LKCKEYVRSFCMLSHLSQHERIYTRENSYKCEENGKAFNWSSTLTYYKSIHTGEKPYKCEECGKAFSKFS
ILTKHKVIHTGEKPYKCEECGKAFNRSSILTKHKIIHTGEKPYKCEECGKGFSSVSTLNTHKAIHAEEKP
YKCEECGKASNSSSKLMEHKRIHTGEKPYKCEECGKAFSWSSSLTEHKRIHAGEKPYKCEECGKAFNRSS
ILTKHKIIHTGEKPYKCEGCGKAFSKVSTLNTHKAIHAEEKPYKCEECGKASNSSSKLMEHKRIHTGEKP
YKCEECGKAFSWSSSLTEHKRIHAGEKPYKCEECGKAFTWSSSFTKHKRIHAAEKPYKCEECGKGFSTFS
ILTKHKIIHTGEKRYKCEECGKAFSWSSILTEHKIIHTGEKPYKCEECGKAFSRSSSLTRHKRIHTGEKP
YKCEECGKAFKSSSTVSYHKKIHTGENP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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