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Report for CCDS6002.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6002.2 Public Homo sapiens 8 SLC7A2 24 110 108 CCDS HistoryNCBI Gene:6542Re-query CCDS DB by CCDS ID:6002.2Re-query CCDS DB by GeneID:6542See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 6002.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398090.3 ENSP00000381164.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398090.3Link to Ensembl Protein Viewer:ENSP00000381164.3Re-query CCDS DB by Nucleotide ID:ENST00000398090Re-query CCDS DB by Protein ID:ENSP00000381164
Original member Current member NCBI NM_003046.6 NP_003037.4 Accepted alive Link to Nucleotide Sequence:NM_003046.6Link to Protein Sequence:NP_003037.4Re-query CCDS DB by Nucleotide ID:NM_003046Re-query CCDS DB by Protein ID:NP_003037Link to BLAST:NP_003037.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003037.4 697 P52569-2 697 100% 0 0

Chromosomal Locations for CCDS 6002.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 17538825 17538922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17543318 17543715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17544451 17544606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17548678 17548843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17550301 17550434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17551764 17551986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17554946 17555082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17558295 17558397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17560328 17560533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17561944 17562110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17563603 17563711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17564950 17565146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGAAGATAGAAACAAGTGGTTATAACTCAGACAAACTAATTTGTCGAGGGTTTATTGGAACACCTGCCC
CACCGGTTTGCGACAGCAAGTTTCTCCTGTCGCCTTCGTCAGACGTCAGAATGATTCCTTGCAGAGCCGC
GCTGACCTTTGCCCGATGTCTGATCCGGAGAAAAATCGTGACCCTGGACAGTCTAGAAGACACCAAATTA
TGCCGCTGCTTATCCACCATGGACCTCATTGCCCTGGGCGTTGGAAGCACCCTTGGGGCCGGGGTTTATG
TCCTCGCTGGGGAGGTGGCCAAGGCAGACTCGGGCCCCAGCATCGTGGTGTCCTTCCTCATTGCTGCCCT
GGCTTCAGTGATGGCTGGCCTCTGCTATGCCGAATTTGGGGCCCGTGTTCCCAAGACGGGGTCTGCATAT
TTGTACACCTACGTGACTGTCGGAGAGCTGTGGGCCTTCATCACTGGCTGGAATCTCATTTTATCGTATG
TGATAGGTACATCAAGTGTTGCAAGAGCCTGGAGTGGCACCTTTGATGAACTTCTTAGCAAACAGATTGG
TCAGTTTTTGAGGACATACTTCAGAATGAATTACACTGGTCTTGCAGAATATCCCGATTTTTTTGCTGTG
TGCCTTATATTACTTCTAGCAGGTCTTTTGTCTTTTGGAGTAAAAGAGTCTGCTTGGGTGAATAAAGTCT
TCACAGCTGTTAATATTCTCGTCCTTCTGTTTGTGATGGTTGCTGGGTTTGTGAAAGGAAATGTGGCAAA
CTGGAAGATTAGTGAAGAGTTTCTCAAAAATATATCAGCAAGTGCCAGAGAGCCACCTTCTGAAAACGGA
ACAAGTATCTATGGGGCTGGTGGCTTTATGCCTTATGGCTTTACGGGAACGTTGGCTGGTGCTGCAACTT
GCTTTTATGCCTTTGTGGGATTTGACTGCATTGCAACAACTGGTGAAGAAGTTCGGAATCCCCAGAAAGC
TATTCCCATTGGAATTGTGACGTCTTTGCTTGTTTGCTTTATGGCCTATTTTGGGGTCTCTGCAGCTTTA
ACACTTATGATGCCGTACTACCTCCTCGATGAAAAAAGCCCCCTTCCTGTAGCGTTTGAATATGTGGGAT
GGGGTCCTGCCAAATATGTCGTCGCAGCTGGTTCTCTCTGCGCCTTGTCAACAAGTCTTCTGGGCTCTAT
GTTTCCTTTACCCCGAATTCTGTTTGCCATGGCCCGGGATGGCTTACTGTTTAGATTTCTTGCCAGAGTG
AGTAAGAGGCAGTCACCAGTTGCTGCCACGTTGACTGCAGGGGTCATTTCTGCTTTGATGGCCTTTCTGT
TTGACCTGAAGGCGCTTGTGGACATGATGTCCATTGGCACACTCATGGCCTACTCTCTGGTGGCAGCCTG
TGTTCTCATCCTCAGGTACCAGCCTGGCTTATCTTACGACCAGCCCAAATGTTCTCCTGAGAAAGATGGT
CTGGGATCGTCTCCCAGGGTAACCTCGAAGAGTGAGTCCCAGGTCACCATGCTGCAGAGACAGGGCTTCA
GCATGCGGACCCTCTTCTGCCCCTCCCTTCTGCCAACACAGCAGTCAGCTTCTCTCGTGAGCTTTCTGGT
AGGATTCCTAGCTTTCCTCGTGTTGGGCCTGAGTGTCTTGACCACTTACGGAGTTCATGCCATCACCAGG
CTGGAGGCCTGGAGCCTCGCTCTCCTCGCGCTGTTTCTTGTTCTCTTCGTTGCCATCGTTCTCACCATCT
GGAGGCAGCCCCAGAATCAGCAAAAAGTAGCCTTCATGGTTCCATTCTTACCATTTTTGCCAGCGTTCAG
CATCTTGGTGAACATTTACTTGATGGTCCAGTTAAGTGCAGACACTTGGGTCAGATTCAGCATTTGGATG
GCAATTGGCTTCCTGATTTACTTTTCTTATGGCATTAGACACAGCCTGGAGGGTCATCTGAGAGATGAAA
ACAATGAAGAAGATGCTTATCCAGACAACGTTCATGCAGCAGCAGAAGAAAAATCTGCCATTCAAGCAAA
TGACCATCACCCAAGAAATCTCAGTTCACCTTTCATATTCCATGAAAAGACAAGTGAATTCTAA

Translation (697 aa):
MKIETSGYNSDKLICRGFIGTPAPPVCDSKFLLSPSSDVRMIPCRAALTFARCLIRRKIVTLDSLEDTKL
CRCLSTMDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPKTGSAY
LYTYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTFDELLSKQIGQFLRTYFRMNYTGLAEYPDFFAV
CLILLLAGLLSFGVKESAWVNKVFTAVNILVLLFVMVAGFVKGNVANWKISEEFLKNISASAREPPSENG
TSIYGAGGFMPYGFTGTLAGAATCFYAFVGFDCIATTGEEVRNPQKAIPIGIVTSLLVCFMAYFGVSAAL
TLMMPYYLLDEKSPLPVAFEYVGWGPAKYVVAAGSLCALSTSLLGSMFPLPRILFAMARDGLLFRFLARV
SKRQSPVAATLTAGVISALMAFLFDLKALVDMMSIGTLMAYSLVAACVLILRYQPGLSYDQPKCSPEKDG
LGSSPRVTSKSESQVTMLQRQGFSMRTLFCPSLLPTQQSASLVSFLVGFLAFLVLGLSVLTTYGVHAITR
LEAWSLALLALFLVLFVAIVLTIWRQPQNQQKVAFMVPFLPFLPAFSILVNIYLMVQLSADTWVRFSIWM
AIGFLIYFSYGIRHSLEGHLRDENNEEDAYPDNVHAAAEEKSAIQANDHHPRNLSSPFIFHEKTSEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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