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Report for CCDS34906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34906.1 Public Homo sapiens 8 EYA1 24 110 108 CCDS HistoryNCBI Gene:2138Re-query CCDS DB by CCDS ID:34906.1Re-query CCDS DB by GeneID:2138See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34906.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340726.8 ENSP00000342626.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340726.8Link to Ensembl Protein Viewer:ENSP00000342626.3Re-query CCDS DB by Nucleotide ID:ENST00000340726Re-query CCDS DB by Protein ID:ENSP00000342626
Original member Current member EBI ENST00000388742.8 ENSP00000373394.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000388742.8Link to Ensembl Protein Viewer:ENSP00000373394.4Re-query CCDS DB by Nucleotide ID:ENST00000388742Re-query CCDS DB by Protein ID:ENSP00000373394
Original member Current member EBI ENST00000647540.1 ENSP00000494438.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647540.1Link to Ensembl Protein Viewer:ENSP00000494438.1Re-query CCDS DB by Nucleotide ID:ENST00000647540Re-query CCDS DB by Protein ID:ENSP00000494438
Original member Current member EBI ENST00000645793.1 ENSP00000496255.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645793.1Link to Ensembl Protein Viewer:ENSP00000496255.1Re-query CCDS DB by Nucleotide ID:ENST00000645793Re-query CCDS DB by Protein ID:ENSP00000496255
Original member Current member NCBI NM_000503.6 NP_000494.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000503.6Link to Protein Sequence:NP_000494.2Re-query CCDS DB by Nucleotide ID:NM_000503Re-query CCDS DB by Protein ID:NP_000494Link to BLAST:NP_000494.2
Original member Current member NCBI NM_001370334.1 NP_001357263.1 Accepted alive Link to Nucleotide Sequence:NM_001370334.1Link to Protein Sequence:NP_001357263.1Re-query CCDS DB by Nucleotide ID:NM_001370334Re-query CCDS DB by Protein ID:NP_001357263Link to BLAST:NP_001357263.1
Original member Current member NCBI NM_001370335.1 NP_001357264.1 Accepted alive Link to Nucleotide Sequence:NM_001370335.1Link to Protein Sequence:NP_001357264.1Re-query CCDS DB by Nucleotide ID:NM_001370335Re-query CCDS DB by Protein ID:NP_001357264Link to BLAST:NP_001357264.1
Original member Current member NCBI NM_172058.4 NP_742055.1 Accepted alive Link to Nucleotide Sequence:NM_172058.4Link to Protein Sequence:NP_742055.1Re-query CCDS DB by Nucleotide ID:NM_172058Re-query CCDS DB by Protein ID:NP_742055Link to BLAST:NP_742055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000494.2 592 Q99502-1 592 100% 0 0
NP_001357263.1 592 Q99502-1 592 100% 0 0
NP_001357264.1 592 Q99502-1 592 100% 0 0
NP_742055.1 592 Q99502-1 592 100% 0 0

Chromosomal Locations for CCDS 34906.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71199340 71199420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71211156 71211256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71215387 71215508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71215614 71215728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71216692 71216852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71216965 71217023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71244603 71244692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71269740 71269823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71271758 71271897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71299047 71299233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71299638 71299720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71317552 71317689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71321734 71321879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71322199 71322268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71334097 71334174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71354782 71354905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGAAATGCAGGATCTAACCAGCCCGCATAGCCGTCTGAGTGGTAGTAGTGAATCCCCCAGTGGCCCCA
AACTCGGTAACTCTCATATAAATAGTAATTCCATGACTCCCAATGGCACCGAAGTTAAAACAGAGCCAAT
GAGCAGCAGTGAAACAGCTTCAACGACAGCCGACGGGTCTTTAAACAATTTCTCAGGTTCAGCAATTGGG
AGCAGTAGTTTCAGCCCACGACCAACTCACCAGTTCTCTCCACCACAGATTTACCCTTCCAACAGACCAT
ACCCACATATTCTCCCTACCCCTTCCTCACAAACTATGGCTGCATATGGGCAAACACAGTTTACCACAGG
AATGCAACAAGCTACAGCCTATGCCACGTACCCACAGCCAGGACAGCCGTACGGCATTTCCTCATATGGT
GCATTGTGGGCAGGCATCAAGACTGAAGGTGGATTGTCACAGTCTCAGTCACCTGGACAGACAGGATTTC
TCAGCTATGGCACAAGCTTCAGTACCCCTCAACCTGGACAGGCACCATACAGCTACCAGATGCAAGGTAG
CAGTTTTACAACATCATCAGGAATATATACAGGAAATAATTCACTCACAAATTCCTCTGGATTTAATAGT
TCACAGCAGGACTATCCGTCTTATCCCAGTTTTGGCCAGGGTCAGTACGCACAGTATTATAACAGCTCAC
CGTATCCAGCACATTATATGACCAGCAGCAACACCAGCCCAACGACACCATCCACCAATGCCACTTACCA
GCTTCAAGAACCGCCATCTGGCATCACCAGCCAAGCAGTTACAGATCCCACAGCAGAGTACAGCACAATC
CACAGCCCATCAACACCCATTAAAGATTCAGATTCTGATCGATTGCGTCGAGGTTCAGATGGGAAATCAC
GTGGACGGGGCCGAAGAAACAATAATCCTTCACCTCCCCCAGATTCTGATCTTGAGAGAGTGTTCATCTG
GGACTTGGATGAGACAATCATTGTTTTCCACTCCTTGCTTACTGGGTCCTACGCCAACAGATATGGGAGG
GATCCACCCACTTCAGTTTCCCTTGGACTGCGAATGGAAGAAATGATTTTCAACTTGGCAGACACACATT
TATTTTTTAATGACTTAGAAGAATGTGACCAAGTCCATATAGATGATGTTTCTTCAGATGATAACGGACA
GGACCTAAGCACATATAACTTTGGAACAGATGGCTTTCCTGCTGCAGCAACCAGTGCTAACTTATGTTTG
GCAACTGGTGTACGGGGCGGTGTGGACTGGATGAGAAAGTTGGCCTTCCGCTACAGACGGGTAAAAGAGA
TCTACAACACCTACAAAAATAATGTTGGAGGTCTGCTTGGTCCAGCTAAGAGGGAAGCCTGGCTGCAGTT
GAGGGCCGAAATTGAAGCCCTGACCGACTCCTGGTTGACACTGGCCCTGAAAGCACTCTCGCTCATTCAC
TCCCGGACAAACTGTGTGAATATTTTAGTAACAACTACTCAGCTCATCCCAGCATTGGCGAAAGTCCTGC
TGTATGGGTTAGGAATTGTATTTCCAATAGAAAATATTTACAGTGCAACTAAAATAGGAAAAGAAAGCTG
TTTTGAGAGAATAATTCAAAGGTTTGGAAGAAAAGTGGTGTATGTTGTTATAGGAGATGGTGTAGAAGAA
GAACAAGGAGCAAAAAAGCACGCGATGCCCTTCTGGAGGATCTCCAGCCACTCGGACCTCATGGCCCTGC
ACCATGCCTTGGAACTGGAGTACCTGTAA

Translation (592 aa):
MEMQDLTSPHSRLSGSSESPSGPKLGNSHINSNSMTPNGTEVKTEPMSSSETASTTADGSLNNFSGSAIG
SSSFSPRPTHQFSPPQIYPSNRPYPHILPTPSSQTMAAYGQTQFTTGMQQATAYATYPQPGQPYGISSYG
ALWAGIKTEGGLSQSQSPGQTGFLSYGTSFSTPQPGQAPYSYQMQGSSFTTSSGIYTGNNSLTNSSGFNS
SQQDYPSYPSFGQGQYAQYYNSSPYPAHYMTSSNTSPTTPSTNATYQLQEPPSGITSQAVTDPTAEYSTI
HSPSTPIKDSDSDRLRRGSDGKSRGRGRRNNNPSPPPDSDLERVFIWDLDETIIVFHSLLTGSYANRYGR
DPPTSVSLGLRMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYNFGTDGFPAAATSANLCL
ATGVRGGVDWMRKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLTLALKALSLIH
SRTNCVNILVTTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFERIIQRFGRKVVYVVIGDGVEE
EQGAKKHAMPFWRISSHSDLMALHHALELEYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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