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Report for CCDS36240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36240.1 Public Mus musculus 11 Lyrm9 23 108 98 CCDS HistoryNCBI Gene:66274Re-query CCDS DB by CCDS ID:36240.1Re-query CCDS DB by GeneID:66274See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36240.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147875.8 ENSMUSP00000127853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147875.8Link to Ensembl Protein Viewer:ENSMUSP00000127853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147875Re-query CCDS DB by Protein ID:ENSMUSP00000127853
Original member Current member NCBI NM_001076681.2 NP_001070149.1 Accepted alive Link to Nucleotide Sequence:NM_001076681.2Link to Protein Sequence:NP_001070149.1Re-query CCDS DB by Nucleotide ID:NM_001076681Re-query CCDS DB by Protein ID:NP_001070149Link to BLAST:NP_001070149.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070149.1 78 Q3UN90 78 100% 0 0

Chromosomal Locations for CCDS 36240.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78836033 78836158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78838090 78838182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78839123 78839140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (237 nt):
ATGGCCCCTCTGCCAGGGGCAGAGCTGGTCCAGACGCCATTGCAGCTGTACCGTTACTTGTTACGTTGTT
GCCGGCAGCTGCCAACCAAGGGCATCCAGGAGCACTACAAGCATGCTGTCAGGCAGAGTTTCCAAGTTCA
TTCAGATGAAGACAACTCCGAGAGAATCCAGCAGATTATTAAAAGAGCCATTGAAGATGCCGACTGGATC
ATGAACAAATATAGGAAACAAAACTGA

Translation (78 aa):
MAPLPGAELVQTPLQLYRYLLRCCRQLPTKGIQEHYKHAVRQSFQVHSDEDNSERIQQIIKRAIEDADWI
MNKYRKQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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