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Report for CCDS36440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36440.1 Public Mus musculus 12 Strn3 23 108 98 CCDS HistoryNCBI Gene:94186Re-query CCDS DB by CCDS ID:36440.1Re-query CCDS DB by GeneID:94186See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013130.14 ENSMUSP00000013130.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013130.14Link to Ensembl Protein Viewer:ENSMUSP00000013130.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000013130Re-query CCDS DB by Protein ID:ENSMUSP00000013130
Original member Current member NCBI NM_052973.2 NP_443205.1 Accepted alive Link to Nucleotide Sequence:NM_052973.2Link to Protein Sequence:NP_443205.1Re-query CCDS DB by Nucleotide ID:NM_052973Re-query CCDS DB by Protein ID:NP_443205Link to BLAST:NP_443205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443205.1 796 Q9ERG2 796 100% 0 0

Chromosomal Locations for CCDS 36440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51610103 51610272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51610360 51610446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51619814 51619921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51621780 51621920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51623176 51623343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51627110 51627231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51627513 51627560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51627705 51627880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51629374 51629507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51633579 51633719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51643104 51643214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51647994 51648135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51650104 51650230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51652672 51652845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51655402 51655483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51661151 51661224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51661610 51661713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51691422 51691703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGGACGAGCTGGCCGGAGGCGGCGGCGGCGGCCAGGGGATGGCAGCCCCTCCCCGGCCGCAGCAGGGAC
CCGGGGGGAACCTGAGCCTGCCGCCGGGAGCGAACGGAGCGCCGGGCGGCGGGGGTCCTCCGGCCGCCGA
GGCGGCGGGGCCCCCGGCAGGCCCGGAGCTGTCCCGGCCGCAACAGTACACGATCCCGGGGATCCTACAC
TACATCCAGCACGAGTGGGCTCGCTTCGAGATGGAGCGGGCGCACTGGGAGGTGGAGCGGGCCGAGCTGC
AGGCACGGATTGCATTTTTACAAGGAGAAAGGAAAGGTCAAGAGAATTTGAAGAAGGATTTAGTGAGAAG
AATAAAGATGTTAGAGTATGCATTAAAACAAGAAAGGGCAAAGTATCACAAATTAAAATATGGCACAGAA
CTGAACCAAGGTGATTTGAAAATGCCCACCTTTGAATCAGAGGAAACCAAAGATGTGGAGGCTCCTCCAG
CACCTCAGAATAGTCAACTAACATGGAAGCAAGGCAGACAGCTATTAAGACAGTATCTTCAGGAAGTAGG
ATACACAGATACAATATTAGATGTACGATCTCAACGGGTAAGGTCATTACTTGGACTGTCTAATTCAGAG
CCAAATGGATCTGTAGAAGCAAAGAATTTAGAACAGATCTTGAATGGTGGTGAATCTCCTAAGCAAAAAG
GACAAGAAATCAAAAGGCCCCCTGGTGATGTTCTCGAGACATTCAATTTCTTAGAAAATGCTGATGACAG
TGATGAAGAAGAAAATGACATGATTGAGGGCATCCCAGAAGGAAAAGACAAACTTCGGATCCATAAGCAC
AAAATAGGTAATGAAGGTTTAGCTGCTGACTTAACTGATGATCCAGATACTGAGGAAGCACTGAAAGAAT
TCGACTTTTTAGTGACTGCAGAAGATGGTGAAGGGGCTGGTGAAGCACGGAGTTCAGGGGATGGTACAGA
ATGGGATAAAGATGACCTCTCCCCAACTGCTGAGGTTTGGGATGTAGACCAGGGGCTAATAAGTAAACTG
AAGGAACAGTACAAGAAGGAGCGAAAGGGGAAGAAAGGGGTGAAGAGGGTCAACAGGACAAACCTCTGCG
ACATGATAACTGATCTGGGAGATGATGAGCTGCCCCACATCCCTTCAGGAATCATTAATCAGTCTAGGTC
AGCTTCTACTAGAATGGCTGATCATGAAGGTGCAAGAGCAGAGGAAGCTGAACCAATAACGTTTCCATCT
GGAGGAGGCAAGTCATTTATTATGGGTTCTGATGATGTTTTGTTAAGTGTACTGGGCCTTGGAGACCTTG
CAGACTTGACGGTAACAAATGATGCAGACTATAGTTATGATTTGCCTGCCAATAAAGATGCCTTTCGAAA
GACTTGGAACCCCAAATACACACTACGTAGTCATTTTGATGGTGTGAGAGCATTAGCTTTTCATCCTGTA
GAGCCTGTGCTCGTTACTGCCTCTGAGGACCACACCCTGAAACTTTGGAACCTGCAAAAGACAGTTCCTG
CCAAAAAGAGTGCCTCTTTAGATGTAGAACCTATCTACACATTTAGGGCCCACATTGGCCCTGTCCTGTC
ATTAGCTATTAGTTCTAATGGAGAACAGTGTTTTAGTGGTGGCATTGATGCAACCATTCAGTGGTGGAAT
ATGCCTAGTCCTAATGTGGATCCCTATGATACATATGAGTCAAACGTTCTAGCTGGCACTTTAGTTGCTC
ATACAGATGCAGTCTGGGGTCTTGCCTATAGTGGCATAAAAAACCAATTACTCTCTTGCTCAGCAGATGG
CACTATTAGGTTATGGAACCCACAAGAAAAGCTGCCATGTGTTTGCACTTACAATGGAGACAAGGAACAT
GGAATACCTACATCAGTTGATTTTATAGGCTGTGATCCAGCCCATATGGTTACGTCTTTCAACACTGGTA
GTGCGGTAATTTATGATTTAGAAACATCACAGTCATTAGTGATGCTTTCCTCACAGGTAGATTCTGGTTT
ACAATCTAGTAATCACATTAACAGAGTAGTAAGTCACCCTACACTTCCTGTTACAATAACTGCTCATGAA
GACAGACACATCAAGTTTTTTGACAATAAAACGGGTAAAATGATCCATTCTATGGTAGCTCATTTGGATG
CTGTTACAAGTTTAGCAGTAGATCCCAATGGAATCTATTTGATGTCTGGAAGCCATGACTGTTCCATTAG
ACTATGGAATTTGGACAGTAAGACATGTGTACAAGAAATAACAGCTCATAGGAAGAAATTGGATGAGTCA
ATTTATGATGTTGCTTTCCATCCATCAAAGGCATATATCGCCAGTGCAGGAGCTGATGCTCTTGCCAAAG
TATTTGTGTGA

Translation (796 aa):
MDELAGGGGGGQGMAAPPRPQQGPGGNLSLPPGANGAPGGGGPPAAEAAGPPAGPELSRPQQYTIPGILH
YIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTE
LNQGDLKMPTFESEETKDVEAPPAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRVRSLLGLSNSE
PNGSVEAKNLEQILNGGESPKQKGQEIKRPPGDVLETFNFLENADDSDEEENDMIEGIPEGKDKLRIHKH
KIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSSGDGTEWDKDDLSPTAEVWDVDQGLISKL
KEQYKKERKGKKGVKRVNRTNLCDMITDLGDDELPHIPSGIINQSRSASTRMADHEGARAEEAEPITFPS
GGGKSFIMGSDDVLLSVLGLGDLADLTVTNDADYSYDLPANKDAFRKTWNPKYTLRSHFDGVRALAFHPV
EPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWWN
MPSPNVDPYDTYESNVLAGTLVAHTDAVWGLAYSGIKNQLLSCSADGTIRLWNPQEKLPCVCTYNGDKEH
GIPTSVDFIGCDPAHMVTSFNTGSAVIYDLETSQSLVMLSSQVDSGLQSSNHINRVVSHPTLPVTITAHE
DRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDES
IYDVAFHPSKAYIASAGADALAKVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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