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Report for CCDS15677.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15677.2 Reviewed, update pending Mus musculus 2 Itih2 23 108 98 CCDS HistoryNCBI Gene:16425Re-query CCDS DB by CCDS ID:15677.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15677.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15677.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042290.13 ENSMUSP00000046530.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042290.13Link to Ensembl Protein Viewer:ENSMUSP00000046530.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042290Re-query CCDS DB by Protein ID:ENSMUSP00000046530
Original member NCBI NM_010582.3 NP_034712.2 Updated not alive Link to Nucleotide Sequence:NM_010582.3Link to Protein Sequence:NP_034712.2Re-query CCDS DB by Nucleotide ID:NM_010582Re-query CCDS DB by Protein ID:NP_034712
Current member NCBI NM_010582.4 NP_034712.3 Pending alive Link to Nucleotide Sequence:NM_010582.4Link to Protein Sequence:NP_034712.3Re-query CCDS DB by Nucleotide ID:NM_010582Re-query CCDS DB by Protein ID:NP_034712Link to BLAST:NP_034712.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034712.3 946 Q61703 946 100% 0 0

Chromosomal Locations for CCDS 15677.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10094754 10094901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10096451 10096562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10097077 10097249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10097902 10098100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10098454 10098567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10102075 10102212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10102785 10102954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10105142 10105281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10105620 10105805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10106653 10106834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10109481 10109606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10110395 10110563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10115229 10115345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10116604 10116732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10117339 10117446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10119467 10119629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10123410 10123514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10126151 10126320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10127775 10127807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10129229 10129303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10130482 10130577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGTCCAGCAAAATGCAGCGGCCTGTGTGCCTTCTCATCTGGCTGTTTCTTCTGGAAGCACAAGCCTTCG
AAATCCCCATAAACGGAAACTCAGAATTTGCAGAATACAGTGATCTTGTGGAACTGGCCCCAGATAAACT
CCCATTTGTGCAAGAGAATGGAAGACATCAGAGAAGCCTTCCTGAGGAATCCGGAGAGGAGACGGACACT
GTTGATCCAGTGACTCTTTATAGCTACAAAGTCCAGTCCACTATTACTTCTCGGGTGGCCACAACTACCA
TCCAGAGCAAACTGGTGAACAATTCCCCATTGCCTCAGAGTGTCGTGTTCGATGTTCAGATTCCCAAAGG
AGCCTTTATCTCCAACTTCACCATGACTGTGAACGGCATGACATTTACAAGCTCCATTAAAGAGAAAACT
GTGGGCCGAGCTCTTTATTCACAGGCAAGAGCAAAGGGCAAGACGGCTGGATGGGTAAGGAGCAGAACTC
TGGATATGGAGAACTTCAACACAGAGGTGAACATCCCGCCTGGAGCCAAGGTGCAGTTTGAACTTCATTA
CCAGGAGGTGAAGTGGAGGAAGCTGGGATCCTATGAGCACAAGATTCATTTGCAGCCCGGGAAGCTGGCC
AAACACTTGGAGGTGAATGTGTGGATTATCGAACCCCAAGGAATGAGATTTCTTCATGTTCCTGACACAT
TTGAAGGCCATTTCCAAGGCGTCCCTGTCATATCTAAAGGACAACAGAAGGCACATGTATCCTTCAAGCC
CACAGTAGCACAACAAAGAAAATGCCCCAACTGCACAGAGACTGCAGTGAACGGGGAGCTGGTGGTGATG
TATGATGTCAACAGAGAAGAGAAGGCCGGGGAACTTGAGGTGTTTAATGGATATTTTGTTCACTTCTTTG
CTCCTGAGAACCTGGACCCAATCCCCAAGAACATCCTTTTTGTTATTGACGTCAGTGGCTCCATGTGGGG
GATTAAGATGAAGCAGACTGTGGAGGCAATGAAGACGATATTGGATGACCTAAGAACAGACGACCAATTC
TCTGTGGTTGATTTCAACCATAATGTTCGAACCTGGAGAAATGATTTAGTTTCAGCTACTAAAACACAAA
TTGCAGATGCCAAGAGATACATTGAGAAAATTCAGCCTAGTGGAGGCACGAATATCAACGAGGCACTGCT
TCGAGCAATTTTCATTTTGAATGAAGCCAGTAACATGGGATTGCTGAACCCCGACTCAGTCTCTCTGATC
ATTTTGGTTTCTGATGGAGATCCAACCGTAGGGGAACTAAAATTGTCCAAAATTCAGAAAAATGTGAAGC
AGAGCATCCAAGATAACATCTCCCTGTTTAGTTTGGGAATCGGATTTGATGTCGACTATGATTTTTTGAA
GAGGCTGTCCAATGAAAATCGTGGTATTGCTCAACGGATCTACGGGAACCAGGACACATCCTCTCAGCTC
AAGAAATTTTACAACCAGGTCTCTACTCCACTGCTCAGAAATGTTCAGTTTAACTACCCGCAGGCATCAG
TAACAGATGTCACCCAAAACAATTTCCACAACTACTTCGGAGGTTCTGAGATCGTGGTGGCAGGGAAATT
TGATCCCAGCAAACTGACAGAAGTCCAGAGCATCATCACGGCAACTTCGGCTAACACAGAATTGGTCTTG
GAAACCCTGAGCCAGATGGATGACTTGGAGGAGTTTCTGTCAAAGGACAAGCATGCAGACCCTGACTTCA
CCAAGAAGCTGTGGGCCTATCTCACCATCAACCAACTACTAGCAGAGAGAAGTCTGGCTCCTACTGCTGC
CATCAAAAGGAAAATCACCAAAACAATCCTGCAGATGTCTCTAGACCATCACATCGTGACTCCGCTTACT
GCCATGGTGATAGAGAATGATGCTGGAGATGAACGCATGCTGGCTGACTCCCCGCCACAGGACCACTCCT
GCTGCTCAGGCGCACTGTATTATGGCACCAAGGTTGCCTCGGGTCCCATCCCATCATGGGCCAACCCATC
TCCGACACCAATGTCGGCCATGCTTGCAGTCGGAGCGAAGCCACTTGAGTCTACTCCACCTACTCATTTG
AATCAAGTGGAAAATGACCCCCACTTCATCATTTACCTGCCCAAAAGCAAAAGGAATATTTGTTTCAATA
TTGACTCAGAACCTGGGAAAATCCTAAGCCTGGTGTCTGACCCAGAATCAGGGATTGTAGTCAACGGTCA
GCTTATCGGCGCCAAGAGGGCAGAGAATGGAAAGCTAAGCACCTACTTTGGAAAACTGGGGTTTTATTTC
CAAAAGGAAGGCATGAAGATAGAAATCAGCACCGAGACCATCACCCTGAGCTCTGGCTCCTCTACATCTC
GACTGTCCTGGTCCGACACAGCTCATCTTGGAAACTCGAGGGTGCTCATCTCTGTGAAGAAAGAAAAATC
TGTGACTCTCACCCTGAATAAAGAGCTGTTCTTTTCCGTTCTGCTGCATCGTGTGTGGAGGAAGCACCCA
GTTAACGTGGACTTCCTGGGGATCTACGCTCCCCCCATAGACAAGTTCTCACCTAGAGTGCATGGACTGT
TAGGCCAGTTCATGCAGGAGCCAGCCATCCACATCTTCAATGAGAGACCCGGAAAGGAGCCGGGAAAACC
CGAGGCAAGCATGGAGGTGAAAGGACATAAGCTGACTGTCACCAGAGGCCTGCAGAAGGACTACAGGACG
GATATCGTGTTTGGAACAGACGTTCCCTGCTGGTTTGTACACAACAGTGGGAAAGGTTTCATCGATGGAC
ATTATAAGGATTATTTTGTGCCTCAGCTCTACAGCTTTCTCAAGCGGCCTTAA

Translation (950 aa):
MSSKMQRPVCLLIWLFLLEAQAFEIPINGNSEFAEYSDLVELAPDKLPFVQENGRHQRSLPEESGEETDT
VDPVTLYSYKVQSTITSRVATTTIQSKLVNNSPLPQSVVFDVQIPKGAFISNFTMTVNGMTFTSSIKEKT
VGRALYSQARAKGKTAGWVRSRTLDMENFNTEVNIPPGAKVQFELHYQEVKWRKLGSYEHKIHLQPGKLA
KHLEVNVWIIEPQGMRFLHVPDTFEGHFQGVPVISKGQQKAHVSFKPTVAQQRKCPNCTETAVNGELVVM
YDVNREEKAGELEVFNGYFVHFFAPENLDPIPKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRTDDQF
SVVDFNHNVRTWRNDLVSATKTQIADAKRYIEKIQPSGGTNINEALLRAIFILNEASNMGLLNPDSVSLI
ILVSDGDPTVGELKLSKIQKNVKQSIQDNISLFSLGIGFDVDYDFLKRLSNENRGIAQRIYGNQDTSSQL
KKFYNQVSTPLLRNVQFNYPQASVTDVTQNNFHNYFGGSEIVVAGKFDPSKLTEVQSIITATSANTELVL
ETLSQMDDLEEFLSKDKHADPDFTKKLWAYLTINQLLAERSLAPTAAIKRKITKTILQMSLDHHIVTPLT
AMVIENDAGDERMLADSPPQDHSCCSGALYYGTKVASGPIPSWANPSPTPMSAMLAVGAKPLESTPPTHL
NQVENDPHFIIYLPKSKRNICFNIDSEPGKILSLVSDPESGIVVNGQLIGAKRAENGKLSTYFGKLGFYF
QKEGMKIEISTETITLSSGSSTSRLSWSDTAHLGNSRVLISVKKEKSVTLTLNKELFFSVLLHRVWRKHP
VNVDFLGIYAPPIDKFSPRVHGLLGQFMQEPAIHIFNERPGKEPGKPEASMEVKGHKLTVTRGLQKDYRT
DIVFGTDVPCWFVHNSGKGFIDGHYKDYFVPQLYSFLKRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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