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Report for CCDS47006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47006.1 Public Homo sapiens 4 TBC1D14 24 110 108 CCDS HistoryNCBI Gene:57533Re-query CCDS DB by CCDS ID:47006.1Re-query CCDS DB by GeneID:57533See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451522.6 ENSP00000388886.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451522.6Link to Ensembl Protein Viewer:ENSP00000388886.2Re-query CCDS DB by Nucleotide ID:ENST00000451522Re-query CCDS DB by Protein ID:ENSP00000388886
Original member Current member NCBI NM_001113363.2 NP_001106834.1 Accepted alive Link to Nucleotide Sequence:NM_001113363.2Link to Protein Sequence:NP_001106834.1Re-query CCDS DB by Nucleotide ID:NM_001113363Re-query CCDS DB by Protein ID:NP_001106834Link to BLAST:NP_001106834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106834.1 413 Q9P2M4-2 413 100% 0 0

Chromosomal Locations for CCDS 47006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6987347 6987349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6994184 6994302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6996325 6996407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6999085 6999202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7001145 7001251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7004844 7004924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7006632 7006726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7009877 7009948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7010653 7010781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7014448 7014557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7025004 7025262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7030327 7030392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGAATATGAAGACAAGGCTGGAAGACCTAGCAAGCCACCCTCTCCAAAGCAGAATGTGAGGAAGAATC
TTGACTTTGAACCACTTTCCACCACCGCACTCATCCTCGAGGACAGACCAGCAAATCTCCCAGCAAAACC
AGCTGAAGAAGCTCAGAAGCACAGACAGCAGTATGAAGAAATGGTGGTTCAGGCCAAAAAGCGAGAGCTG
AAAGAAGCCCAGCGAAGGAAGAAGCAGCTGGAAGAAAGATGCAGAGTCGAGGAAAGCATTGGAAACGCTG
TGCTCACCTGGAATAATGAGATCTTACCTAACTGGGAAACAATGTGGTGCTCTAGAAAAGTTCGAGATTT
ATGGTGGCAGGGAATCCCTCCAAGTGTGAGAGGCAAAGTCTGGAGCTTAGCCATTGGCAACGAGTTAAAT
ATCACCCACGAGCTCTTTGACATCTGTCTTGCCCGAGCCAAGGAGAGGTGGCGGTCCCTTAGCACAGGAG
GCTCTGAAGTGGAGAACGAAGATGCTGGTTTTTCAGCAGCAGACAGAGAAGCCAGTCTGGAGCTTATTAA
ACTGGACATTTCTAGAACATTTCCTAATCTCTGCATTTTCCAGCAAGGTGGTCCATATCATGACATGTTG
CACAGTATTTTGGGCGCTTATACTTGTTACCGGCCAGATGTGGGTTATGTCCAGGGCATGTCCTTCATAG
CAGCAGTGTTGATCTTGAACTTAGATACTGCAGATGCCTTTATTGCCTTTTCTAACCTTCTGAATAAACC
CTGTCAAATGGCGTTTTTTAGAGTGGACCATGGCCTTATGTTGACTTATTTTGCTGCATTTGAAGTATTC
TTTGAAGAAAATTTGCCGAAATTATTTGCGCATTTCAAGAAGAACAACCTAACTCCAGATATCTACCTAA
TTGATTGGATCTTTACCTTATATAGTAAATCTCTGCCCCTCGACCTGGCCTGTCGTATCTGGGACGTGTT
CTGTCGCGATGGGGAAGAGTTCCTGTTCCGCACGGCCCTGGGCATCCTGAAGCTGTTCGAGGACATCCTG
ACCAAGATGGACTTCATTCACATGGCCCAGTTCCTGACCCGGCTGCCCGAGGACCTGCCCGCCGAGGAGC
TGTTTGCCTCCATCGCCACGATCCAGATGCAGAGCCGAAACAAGAAGTGGGCTCAGGTACTGACTGCATT
GCAGAAAGACAGCCGGGAAATGGAGAAGGGAAGTCCGTCCCTCCGACACTGA

Translation (413 aa):
MEYEDKAGRPSKPPSPKQNVRKNLDFEPLSTTALILEDRPANLPAKPAEEAQKHRQQYEEMVVQAKKREL
KEAQRRKKQLEERCRVEESIGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELN
ITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDML
HSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVF
FEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDIL
TKMDFIHMAQFLTRLPEDLPAEELFASIATIQMQSRNKKWAQVLTALQKDSREMEKGSPSLRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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