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Report for CCDS57605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57605.1 Public Mus musculus 8 Sox1 23 108 98 CCDS HistoryNCBI Gene:20664Re-query CCDS DB by CCDS ID:57605.1Re-query CCDS DB by GeneID:20664See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180353.1 ENSMUSP00000137203.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180353.1Link to Ensembl Protein Viewer:ENSMUSP00000137203.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180353Re-query CCDS DB by Protein ID:ENSMUSP00000137203
Original member Current member NCBI NM_009233.3 NP_033259.2 Accepted alive Link to Nucleotide Sequence:NM_009233.3Link to Protein Sequence:NP_033259.2Re-query CCDS DB by Nucleotide ID:NM_009233Re-query CCDS DB by Protein ID:NP_033259Link to BLAST:NP_033259.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033259.2 391 P53783 391 100% 0 0

Chromosomal Locations for CCDS 57605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12396361 12397536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGTACAGCATGATGATGGAGACCGACCTGCACTCGCCCGGCGGCGCCCAGGCGCCCACGAACCTCTCGG
GCCCGGCCGGGGCGGGCGGGGGCGGCGGTGGGGGCGGGGGCGGCGGCGGCGGCGGGGGCACCAAGGCCAA
CCAGGATCGGGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGTCCCGCGGACAGCGGCGCAAGATGGCC
CAGGAAAACCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGAGTGGAAGGTCATGTCCG
AGGCCGAGAAGCGGCCGTTCATCGACGAGGCCAAGAGACTGCGCGCGCTGCACATGAAGGAACACCCGGA
TTACAAGTACCGGCCGCGCCGCAAGACCAAGACGCTGCTCAAGAAGGACAAGTACTCGCTGGCCGGCGGG
CTGCTAGCGGCCGGCGCGGGTGGCGGCGGCGCGGCCGTGGCCATGGGTGTGGGCGTGGGCGTCGGGGCGG
CGGCGGTGGGCCAGCGCTTGGAGAGCCCAGGCGGCGCGGCGGGAGGAGGCTACGCGCATGTCAACGGCTG
GGCTAACGGCGCCTACCCCGGCTCGGTGGCCGCGGCGGCTGCGGCCGCGGCCATGATGCAGGAGGCACAG
CTGGCCTACGGGCAGCACCCAGGCGCGGGCGGCGCGCACCCGCACGCACACCCGGCGCACCCGCACCCGC
ACCATCCGCACGCGCATCCTCACAACCCGCAGCCCATGCACCGCTACGACATGGGCGCGCTGCAGTACAG
CCCCATCTCCAACTCTCAGGGCTACATGAGCGCGTCGCCTTCGGGCTACGGCGGCATCCCTTACGGCGCC
GCGGCCGCCGCCGCCGCCGCTGCGGGCGGCGCGCACCAGAACTCGGCGGTGGCGGCAGCGGCAGCCGCGG
CAGCCGCGTCGTCGGGGGCCCTGGGCGCCCTCGGATCTCTGGTCAAGTCGGAGCCGAGCGGCAGTCCGCC
GGCCCCGGCTCACTCACGGGCACCGTGTCCCGGGGACCTGCGCGAGATGATCAGCATGTACCTGCCCGCC
GGCGAGGGTGGCGACCCGGCGGCGGCAGCGGCTGCGGCGGCCCAAAGCCGGCTGCACTCGCTGCCACAGC
ACTACCAGGGCGCGGGCGCGGGCGTCAACGGCACGGTGCCCCTGACGCACATCTAG

Translation (391 aa):
MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGTKANQDRVKRPMNAFMVWSRGQRRKMA
QENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGG
LLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQ
LAYGQHPGAGGAHPHAHPAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGIPYGA
AAAAAAAAGGAHQNSAVAAAAAAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPA
GEGGDPAAAAAAAAQSRLHSLPQHYQGAGAGVNGTVPLTHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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