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Report for CCDS21362.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21362.2 Public Mus musculus 7 Rgma 23 108 98 CCDS HistoryNCBI Gene:244058Re-query CCDS DB by CCDS ID:21362.2Re-query CCDS DB by GeneID:244058See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21362.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21362.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094312.11 ENSMUSP00000091870.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094312.11Link to Ensembl Protein Viewer:ENSMUSP00000091870.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000094312Re-query CCDS DB by Protein ID:ENSMUSP00000091870
Original member Current member NCBI NM_177740.5 NP_808408.2 Accepted alive Link to Nucleotide Sequence:NM_177740.5Link to Protein Sequence:NP_808408.2Re-query CCDS DB by Nucleotide ID:NM_177740Re-query CCDS DB by Protein ID:NP_808408Link to BLAST:NP_808408.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808408.2 454 Q6PCX7-1 454 100% 0 0

Chromosomal Locations for CCDS 21362.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 73375875 73375888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73391381 73391496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73409232 73409749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73417317 73418033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGCAGCCGCCAAGGGAGAGGCTAGTGGTAACAGGCCGAGCTGGATGGATGGGTATGGGGAGAGGGGCAG
GACGTTCAGCCCTGGGATTGTGGCCGACCCTCGCCTTCCTTCTCTGCAGCTTCCCCGCAGCCATCTCCCC
CTGCAAAATCCTCAAGTGCAACTCTGAGTTCTGGAGCGCCACGTCATCAGGCAGCCACGCCCCTGCCTCC
GACGACGTGCCGGAGTTCTGTGCAGCCCTGCGCACCTACGCCCTGTGCACTCGGCGGACAGCCCGCACCT
GCCGGGGCGACCTGGCTTACCACTCGGCTGTCCATGGCATAGAGGACCTTATGAGCCAGCACAACTGCTC
CAAGGACGGCCCCACCTCACAGCCGCGAGTGCGCACGCTCCCGCCAGCTGGGGACAGCCAGGAGCGCTCG
GATAGCCCCGAGATCTGCCACTATGAGAAGAGTTTCCACAAGCACTCAGCTGCCCCCAACTACACTCACT
GCGGCCTCTTTGGGGACCCACACCTCAGGACTTTCACAGACCACTTCCAGACATGCAAGGTGCAAGGCGC
CTGGCCTCTCATCGACAATAATTACCTGAACGTGCAAGTCACCAATACACCTGTGCTGCCGGGCTCCGCA
GCTACCGCCACCAGCAAGCTCACCATCATCTTCAAGAACTTCCAAGAGTGTGTGGACCAGAAAGTCTACC
AAGCTGAAATGGACGAACTTCCGTCTGCCTTTGCGGACGGCTCCAAAAATGGGGGAGATAAACACGGGGC
CAACAGCCTGAAGATCACAGAGAAGGTGTCGGGCCAGCACGTGGAGATCCAGGCCAAGTACATCGGCACC
ACCATCGTGGTGCGACAGGTGGGCCGCTACCTGACCTTTGCCGTCCGGATGCCCGAGGAGGTAGTCAACG
CCGTGGAGGACCGTGACAGCCAAGGCCTCTACCTCTGCCTGCGGGGCTGCCCGCTCAACCAGCAGATCGA
CTTCCAGGCTTTCCGTGCCAACGCTGAAAGCCCTCGCAGGCCAGCAGCCGCCAGTCCCTCTCCCGTGGTC
CCCGAGACATTCCCCTATGAGACAGCCGTGGCCAAGTGCAAAGAGAAGCTGCCCGTAGAAGACCTGTACT
ACCAGGCCTGTGTCTTCGACCTCCTCACGACTGGTGATGTGAACTTCACGCTGGCTGCCTACTATGCTTT
GGAGGATGGCAAGATGCTCCACTCCAACAAGGACAAGCTGCATCTGTTTGAAAGGACTCGGGAGCTGCCA
GGAGCCGTGGCCGCCGCCGCCGCCGCTGCCACCACATTCCCCTTGGCCCCCCAGATTCTCCTTGGCACCA
TCCCACTTCTGGTCCTCCTGCCTGTGTTGTGGTAG

Translation (454 aa):
MQPPRERLVVTGRAGWMGMGRGAGRSALGLWPTLAFLLCSFPAAISPCKILKCNSEFWSATSSGSHAPAS
DDVPEFCAALRTYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGPTSQPRVRTLPPAGDSQERS
DSPEICHYEKSFHKHSAAPNYTHCGLFGDPHLRTFTDHFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA
ATATSKLTIIFKNFQECVDQKVYQAEMDELPSAFADGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGT
TIVVRQVGRYLTFAVRMPEEVVNAVEDRDSQGLYLCLRGCPLNQQIDFQAFRANAESPRRPAAASPSPVV
PETFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDGKMLHSNKDKLHLFERTRELP
GAVAAAAAAATTFPLAPQILLGTIPLLVLLPVLW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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