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Report for CCDS24538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24538.1 Public Mus musculus 11 Kcnmb1 23 108 98 CCDS HistoryNCBI Gene:16533Re-query CCDS DB by CCDS ID:24538.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020362.2 ENSMUSP00000020362.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020362.2Link to Ensembl Protein Viewer:ENSMUSP00000020362.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000020362Re-query CCDS DB by Protein ID:ENSMUSP00000020362
Original member Current member NCBI NM_031169.4 NP_112446.2 Accepted alive Link to Nucleotide Sequence:NM_031169.4Link to Protein Sequence:NP_112446.2Re-query CCDS DB by Nucleotide ID:NM_031169Re-query CCDS DB by Protein ID:NP_112446Link to BLAST:NP_112446.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112446.2 191 Q8CAE3 191 99.4764% 0 1

Chromosomal Locations for CCDS 24538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 33964701 33964834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33966190 33966361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33970095 33970364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGGAAGAAGCTGGTGATGGCCCAGAAGCGCGGAGAGACACGAGCCCTCTGCCTGGGAGTGGCAATGG
TAGTGTGTGCTGCCATCACCTACTACGTCCTGGGTACAACTGTGCTGCCCCTCTACCAGAAAAGTGTGTG
GACCCAGGAATCCATATGTCACTTGATTGAAACTAATATCAAGGACCAGGAAGAGCTGGAGGGCAAGAAG
GTGCCCCAGTACCCATGCCTTTGGGTCAATGTATCAGCTGTGGGCAGATGGGCCATGCTGTATCACACGG
AAGACACTCGGGATCAAAACCAACAGTGCTCCTATATCCCCAGGAACCTGGACAACTACCAGACAGCCTT
GGCAGATGTGAAGAAGGTCAGAGCCAATTTCTATAAGCACCATGAATTCTATTGCCTTTCTGCACCTCAA
GTCAACGAGACCAGCGTCGTGTACCAGCGCCTCTACGGGCCCCAAGTCCTCCTCTTCTCCTTCTTCTGGC
CCACCTTCCTGCTGACCGGGGGTCTTATTCTTATTGCCATGGTGAAGCTCAACAGGTCCCTATCCATCTT
GGCGGCTCAGAAGTAG

Translation (191 aa):
MGKKLVMAQKRGETRALCLGVAMVVCAAITYYVLGTTVLPLYQKSVWTQESICHLIETNIKDQEELEGKK
VPQYPCLWVNVSAVGRWAMLYHTEDTRDQNQQCSYIPRNLDNYQTALADVKKVRANFYKHHEFYCLSAPQ
VNETSVVYQRLYGPQVLLFSFFWPTFLLTGGLILIAMVKLNRSLSILAAQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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