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Report for CCDS23604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23604.1 Public Mus musculus 9 Itga9 23 108 98 CCDS HistoryNCBI Gene:104099Re-query CCDS DB by CCDS ID:23604.1Re-query CCDS DB by GeneID:104099See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044165.13 ENSMUSP00000044227.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044165.13Link to Ensembl Protein Viewer:ENSMUSP00000044227.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044165Re-query CCDS DB by Protein ID:ENSMUSP00000044227
Original member Current member NCBI NM_133721.2 NP_598482.2 Accepted alive Link to Nucleotide Sequence:NM_133721.2Link to Protein Sequence:NP_598482.2Re-query CCDS DB by Nucleotide ID:NM_133721Re-query CCDS DB by Protein ID:NP_598482Link to BLAST:NP_598482.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598482.2 1036 B8JK39 1036 100% 0 0

Chromosomal Locations for CCDS 23604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 118606928 118607115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118626448 118626575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118628139 118628245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118636503 118636626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118652497 118652564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118658466 118658595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118661348 118661433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118663870 118663938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118668612 118668749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118671699 118671804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118672810 118672904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118680936 118681026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118681735 118681780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118689270 118689424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118698314 118698474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118769092 118769241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118784102 118784178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118807165 118807315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118832734 118832820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118834296 118834375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118841093 118841182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118843489 118843597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118850699 118850806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118869291 118869416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118871821 118871940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118877122 118877223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118887764 118887883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118897234 118897332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3111 nt):
ATGGGCGGCCCGGCTGCGGCGCGGACCGGCGCCGGAGGGCTCCGCGCGCTGCTGCTGGCGCTGGTGGCCG
CGGGGGTCCCGGCCGGCGCCTACAACCTGGACGCGCAGCGCCCGGTACGCTTCCAGGGCCCCTCAGGCTC
CTTCTTCGGCTACGCGGTGCTGGAGCACTTCCACGACAACACGCGCTGGGTCCTCGTGGGTGCACCGAAG
GCAGATTCTAAATATAGCACTTCAGTAAAGTCTCCTGGAGCTGTGTTTAAGTGTCGTGTCCATACCAACC
CTGACCGGAGATGCACCGAGCTGGACATGGCTCGAGGGAGGACTCGTGGTGCGCCCTGTGGGAAGACCTG
CAGGGGAGACCGGGATGACGAGTGGATGGGGGTGAGCCTGGCCCGGCAGCCCAGAGCAGATGGCCGTGTT
TTGGCCTGTGCCCATCGTTGGAAGAACATCTACTACGAAGCAGACCACATCCTGCCCCATGGATTCTGCT
ACCTCATCCCTTCCAACCTCCAGGCCAAAGGCAAGGTGCTGATTCCCTGCTACGAAGAGTATAAGAAGAA
GTATGGGGAAGAACATGGCTCCTGCCAGGCCGGAATAGCAGGCTTCTTCACAGAGGAACTGGTGGTCATG
GGTGCCCCAGGCTCGTTTTATTGGGCTGGGACACTCAAGGTGCTGAACCTCACGGACAACACATATTTTA
AGTTGAACGATGAAGCGATTATGAACAGACGGTATACTTATCTGGGCTATGCAGTGACGGCTGGCCACTT
CTCTCATCCATCCATCACTGATGTGGTAGGGGGTGCCCCACAGGATGAAGGCATTGGAAAGGTTTATATA
TTTAGAGCTGACCGAAGATCAGGGACCTTAATAAAGATCTTTCAGGCATCAGGAAAAAAGATGGGCTCTT
ACTTCGGCTCCTCCTTGTGTGCAGTCGACCTGAACATGGACGGCCTCTCTGACTTGCTCGTGGGGGCTCC
CATGTTTTCTGAGATCAGAGATGAGGGGCAGGTCACCGTCTACCTCAACCAAGGACATGGAGCCCTCGAG
GAACAGCTGACCCTGACTGGAGATGCCGCCTACAACGCGCACTTTGGGGAGAGCATCGCCAACCTGGGCG
ACATTGATGATGACGGGTTCCCAGATGTGGCTGTCGGGGCACCTAAGGAGGAGGACTTTGCTGGCGCAGT
CTACATCTATCATGGTGATGCCAATGGGATTGTCCCCAAGTACTCAATGAAGCTGTCTGGGAGGAGGCTA
AACCCGACCCTGCGGATGTTTGGGCAGTCCATATCAGGGGGCATTGATATGGATGGAAATGGCTATCCTG
ATGTCACCATCGGAGCCTTCCTGTCCGACAGCGTGGTTCTCCTCAGGGCCAGACCGGTCATCACGGTGGA
TGTCTCCATCTTCCTGCCAGGCTCCATCAACATCACAGCACCTCAGTGTCACGATGGACAACAGCCTGTG
AACTGCCTGAATGTCACCGTGTGCTTCCGGTTCCATGGCAAGAATGTACCAGGAGAAATCGGTCTGAACT
ACAATCTGACGGCTGATGTGGCACAGAAGGAGAAGGGCCAGCTGCCCAGAGTCTATTTTGTGTTGTTTGG
AGAGACGGCAGGGCAGGTCTCAGAAAGGCTGCAGCTGTCCCACATGGACGAAGTGTGTCATCACTACGTG
GCCCACGTCAAGCGGAGAGTCCAGGATGTCATCAGCCCCATTGTGTTTGAAGCCGCCTACAGCCTGGATG
AGCATGTGATGGGTGAGGAAGACCGGGAGCTGCCAGACCTGACACCAGTGCTTCGCTGGAAGAAGGGACA
AAGGATCTCCCAGAAGAATCAGACAGTTTTTGAAAGGAATTGCCAATCTGAGGACTGTGCTGCCGACCTG
CAGCTTCGGGGGAAACTCCTGCTTTCCAGTGTTGACGAGAAAACCCCACACCTGGCTTTGGGGGCTGTGA
AAAATATCTCTCTAAACATCTCCATCTCCAACCTTGGAGACGACGCCTATGATGCCAACGTGTCCTTTAA
TGTCTCCAGGGAACTTTTCTTCATCAACATGTGGCAGAAGGAGGAGATGGGCATTTCCTGTGAGCTGCTG
GAATCAGACTTCCTCAAGTGCAGTGTGGGATTTCCTTTCATGAGGTCAAAGTCTAAGTATGAATTCAGTG
TCATCTTTGATACAAGCCACCTGTCTGGGGAAGAGGAAATTCTCAGCTTCATCGTGACTGCTCAGAGTGG
CAACTTGGAGCGCTCTGAAGCCCTGCATGACAACACTCTCACACTGACAGTGCCCCTGGTGCATGAAGTG
GACACGTCCATCACTGGAATTGTGTCCCCAACCTCCTTCGTGTATGGCGAGTCTGTGGACGCATCCAACT
TCATTCAGCTGGATGACCAGGAGTGTCATTTCCAACCAGTCAACATTACTCTCCAGGTCTACAACATGGG
TCCCAGCACCCTTCCTGGGTCATCTGTCAGCATCTCCTTCCCCAGCCGGCTGTCACCTGGTGGCGCAGAG
ATGTTTCAGGTCCAGGACATGGTGGTGAGCCAAGAGAAGGGTAACTGCTCTCTACAAAGAAACCCGACCC
CCTGCATCATCCCTCAAGAACAAGAGAACATCTTCCACACCATATTTGCTTTCTTCTCCAAGTCTGGAAG
AAAAGTGTTGGACTGTGAAAAGCCAGGGAGCTTCTGCCTAACGTTGCACTGCAACCTTAGTGCTCTTCCG
AAAGAGGAGAGCCGCACCATCAACCTATACATGCTACTGAACACAGAGATACTGAAGAAGGACAGCTCCT
CTGTCATCCAGTTCATGGCTCGAGCCAAGGTGAAGGTGGAGCCTGCCCTGAGAGTGGTGGAGATAGCTAA
CGGGAACCCAGAAGAGACTCTGGTGGTCTTCGAGGCCTTGCACAATCTGGAACCCCGTGGCTACGTTGTG
GGGTGGATCATCGCCATCAGTTTGCTGGTGGGGATCCTCATTTTTCTGCTGCTGGCTGTGCTCCTGTGGA
AGATGGGCTTCTTCCGCAGAAGGTACAAAGAGATCATTGAAGCTGAGAAAAACCGGAAAGAGAATGAAGA
TGGTTGGGACTGGGTCCAGAAAAACCAGTGA

Translation (1036 aa):
MGGPAAARTGAGGLRALLLALVAAGVPAGAYNLDAQRPVRFQGPSGSFFGYAVLEHFHDNTRWVLVGAPK
ADSKYSTSVKSPGAVFKCRVHTNPDRRCTELDMARGRTRGAPCGKTCRGDRDDEWMGVSLARQPRADGRV
LACAHRWKNIYYEADHILPHGFCYLIPSNLQAKGKVLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVVM
GAPGSFYWAGTLKVLNLTDNTYFKLNDEAIMNRRYTYLGYAVTAGHFSHPSITDVVGGAPQDEGIGKVYI
FRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNMDGLSDLLVGAPMFSEIRDEGQVTVYLNQGHGALE
EQLTLTGDAAYNAHFGESIANLGDIDDDGFPDVAVGAPKEEDFAGAVYIYHGDANGIVPKYSMKLSGRRL
NPTLRMFGQSISGGIDMDGNGYPDVTIGAFLSDSVVLLRARPVITVDVSIFLPGSINITAPQCHDGQQPV
NCLNVTVCFRFHGKNVPGEIGLNYNLTADVAQKEKGQLPRVYFVLFGETAGQVSERLQLSHMDEVCHHYV
AHVKRRVQDVISPIVFEAAYSLDEHVMGEEDRELPDLTPVLRWKKGQRISQKNQTVFERNCQSEDCAADL
QLRGKLLLSSVDEKTPHLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELL
ESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEILSFIVTAQSGNLERSEALHDNTLTLTVPLVHEV
DTSITGIVSPTSFVYGESVDASNFIQLDDQECHFQPVNITLQVYNMGPSTLPGSSVSISFPSRLSPGGAE
MFQVQDMVVSQEKGNCSLQRNPTPCIIPQEQENIFHTIFAFFSKSGRKVLDCEKPGSFCLTLHCNLSALP
KEESRTINLYMLLNTEILKKDSSSVIQFMARAKVKVEPALRVVEIANGNPEETLVVFEALHNLEPRGYVV
GWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEDGWDWVQKNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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