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Report for CCDS52961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52961.1 Public Mus musculus 9 Itga9 23 108 98 CCDS HistoryNCBI Gene:104099Re-query CCDS DB by CCDS ID:52961.1Re-query CCDS DB by GeneID:104099See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124360.7 ENSMUSP00000122417.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124360.7Link to Ensembl Protein Viewer:ENSMUSP00000122417.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124360Re-query CCDS DB by Protein ID:ENSMUSP00000122417
Original member Current member NCBI NM_001113514.1 NP_001106986.1 Accepted alive Link to Nucleotide Sequence:NM_001113514.1Link to Protein Sequence:NP_001106986.1Re-query CCDS DB by Nucleotide ID:NM_001113514Re-query CCDS DB by Protein ID:NP_001106986Link to BLAST:NP_001106986.1

Chromosomal Locations for CCDS 52961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 118769158 118769241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118784102 118784178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118807165 118807315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118832734 118832820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118834296 118834375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118841093 118841182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118843489 118843597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118850699 118850806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118869291 118869416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118871821 118871940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118877122 118877223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118887764 118887883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 118897234 118897332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGGTGAGGAAGACCGGGAGCTGCCAGACCTGACACCAGTGCTTCGCTGGAAGAAGGGACAAAGGATCT
CCCAGAAGAATCAGACAGTTTTTGAAAGGAATTGCCAATCTGAGGACTGTGCTGCCGACCTGCAGCTTCG
GGGGAAACTCCTGCTTTCCAGTGTTGACGAGAAAACCCCACACCTGGCTTTGGGGGCTGTGAAAAATATC
TCTCTAAACATCTCCATCTCCAACCTTGGAGACGACGCCTATGATGCCAACGTGTCCTTTAATGTCTCCA
GGGAACTTTTCTTCATCAACATGTGGCAGAAGGAGGAGATGGGCATTTCCTGTGAGCTGCTGGAATCAGA
CTTCCTCAAGTGCAGTGTGGGATTTCCTTTCATGAGGTCAAAGTCTAAGTATGAATTCAGTGTCATCTTT
GATACAAGCCACCTGTCTGGGGAAGAGGAAATTCTCAGCTTCATCGTGACTGCTCAGAGTGGCAACTTGG
AGCGCTCTGAAGCCCTGCATGACAACACTCTCACACTGACAGTGCCCCTGGTGCATGAAGTGGACACGTC
CATCACTGGAATTGTGTCCCCAACCTCCTTCGTGTATGGCGAGTCTGTGGACGCATCCAACTTCATTCAG
CTGGATGACCAGGAGTGTCATTTCCAACCAGTCAACATTACTCTCCAGGTCTACAACATGGGTCCCAGCA
CCCTTCCTGGGTCATCTGTCAGCATCTCCTTCCCCAGCCGGCTGTCACCTGGTGGCGCAGAGATGTTTCA
GGTCCAGGACATGGTGGTGAGCCAAGAGAAGGGTAACTGCTCTCTACAAAGAAACCCGACCCCCTGCATC
ATCCCTCAAGAACAAGAGAACATCTTCCACACCATATTTGCTTTCTTCTCCAAGTCTGGAAGAAAAGTGT
TGGACTGTGAAAAGCCAGGGAGCTTCTGCCTAACGTTGCACTGCAACCTTAGTGCTCTTCCGAAAGAGGA
GAGCCGCACCATCAACCTATACATGCTACTGAACACAGAGATACTGAAGAAGGACAGCTCCTCTGTCATC
CAGTTCATGGCTCGAGCCAAGGTGAAGGTGGAGCCTGCCCTGAGAGTGGTGGAGATAGCTAACGGGAACC
CAGAAGAGACTCTGGTGGTCTTCGAGGCCTTGCACAATCTGGAACCCCGTGGCTACGTTGTGGGGTGGAT
CATCGCCATCAGTTTGCTGGTGGGGATCCTCATTTTTCTGCTGCTGGCTGTGCTCCTGTGGAAGATGGGC
TTCTTCCGCAGAAGGTACAAAGAGATCATTGAAGCTGAGAAAAACCGGAAAGAGAATGAAGATGGTTGGG
ACTGGGTCCAGAAAAACCAGTGA

Translation (450 aa):
MGEEDRELPDLTPVLRWKKGQRISQKNQTVFERNCQSEDCAADLQLRGKLLLSSVDEKTPHLALGAVKNI
SLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIF
DTSHLSGEEEILSFIVTAQSGNLERSEALHDNTLTLTVPLVHEVDTSITGIVSPTSFVYGESVDASNFIQ
LDDQECHFQPVNITLQVYNMGPSTLPGSSVSISFPSRLSPGGAEMFQVQDMVVSQEKGNCSLQRNPTPCI
IPQEQENIFHTIFAFFSKSGRKVLDCEKPGSFCLTLHCNLSALPKEESRTINLYMLLNTEILKKDSSSVI
QFMARAKVKVEPALRVVEIANGNPEETLVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMG
FFRRRYKEIIEAEKNRKENEDGWDWVQKNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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