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Report for CCDS20094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20094.1 Public Mus musculus 6 Cntnap2 23 108 98 CCDS HistoryNCBI Gene:66797Re-query CCDS DB by CCDS ID:20094.1Re-query CCDS DB by GeneID:66797See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060839.7 ENSMUSP00000056299.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060839.7Link to Ensembl Protein Viewer:ENSMUSP00000056299.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060839Re-query CCDS DB by Protein ID:ENSMUSP00000056299
Original member Current member EBI ENSMUST00000199100.4 ENSMUSP00000143528.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199100.4Link to Ensembl Protein Viewer:ENSMUSP00000143528.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199100Re-query CCDS DB by Protein ID:ENSMUSP00000143528
Original member Current member NCBI NM_025771.3 NP_080047.1 Accepted alive Link to Nucleotide Sequence:NM_025771.3Link to Protein Sequence:NP_080047.1Re-query CCDS DB by Nucleotide ID:NM_025771Re-query CCDS DB by Protein ID:NP_080047Link to BLAST:NP_080047.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080047.1 108 Q9CPW0-2 108 100% 0 0

Chromosomal Locations for CCDS 20094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47271334 47271379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47296719 47296799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47298415 47298614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGTCTTCAGCCACTGACCCTTGGCACCTAGATCACTTGGATTCAGCCAGTGCTGATTTCCCATATAACC
CAGGACAAGGCCAAGCTATAAGAAATGGAGTCAACAGAAACTCAGCTATCATTGGAGGGGTCATCGCTGT
GGTGATTTTCACCATCCTCTGCACCCTGGTCTTCCTCATCCGGTACATGTTCCGTCACAAGGGCACCTAC
CACACCAATGAGGCCAAGGGAGCTGAGTCAGCCGAGAGTGCAGATGCTGCCATCATGAACAACGACCCCA
ACTTCACAGAGACCATTGACGAGAGCAAAAAGGAGTGGCTCATTTGA

Translation (108 aa):
MSSATDPWHLDHLDSASADFPYNPGQGQAIRNGVNRNSAIIGGVIAVVIFTILCTLVFLIRYMFRHKGTY
HTNEAKGAESAESADAAIMNNDPNFTETIDESKKEWLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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