NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86530.1 Public Homo sapiens 16 MT1E 24 110 108 CCDS HistoryNCBI Gene:4493Re-query CCDS DB by CCDS ID:86530.1Re-query CCDS DB by GeneID:4493See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86530.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330439.7 ENSP00000328137.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330439.7Link to Ensembl Protein Viewer:ENSP00000328137.6Re-query CCDS DB by Nucleotide ID:ENST00000330439Re-query CCDS DB by Protein ID:ENSP00000328137
Original member Current member NCBI NM_001363555.2 NP_001350484.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001363555.2Link to Protein Sequence:NP_001350484.1Re-query CCDS DB by Nucleotide ID:NM_001363555Re-query CCDS DB by Protein ID:NP_001350484Link to BLAST:NP_001350484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350484.1 127 P04732-2 127 100% 0 0

Chromosomal Locations for CCDS 86530.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 56625852 56625879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56626466 56626821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGGACCCCAACTGCTCTTGCGCCACTGGTGGCTCCTGCACGTGCGCCGGCTCCTGCAAGTGCAAAGAGT
GCAAATGCACCTCCTGCAAGAAGAGTGAGTGCGGGGCCATCTCCAGGAATCTGGGGCTGTGGCTCAGGTT
GGGAGGGAACTCAAGGCTGGCCCTGAGTGCATCCTTCTGGGGAACTGGGCTTTCTTTGCCCTCATTGCCC
GTGTCATTCCCTCTCCAGGCTTTCTGCCCTAAATTCAGATGGGGCAGGACAGCATTTTTCTCGTGGGACA
CAAACCCCAACTGTACCCCCTATGGTTTCAGAACAGAGCTGTGCCAGACGAAAAAAAGCATCCTCTGGGT
CTGGGTTCTGAGCTCGAGCCAGGCTTGCTATTAG

Translation (127 aa):
MDPNCSCATGGSCTCAGSCKCKECKCTSCKKSECGAISRNLGLWLRLGGNSRLALSASFWGTGLSLPSLP
VSFPLQAFCPKFRWGRTAFFSWDTNPNCTPYGFRTELCQTKKSILWVWVLSSSQACY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH