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Report for CCDS11379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11379.1 Public Homo sapiens 17 KRT20 24 110 108 CCDS HistoryNCBI Gene:54474Re-query CCDS DB by CCDS ID:11379.1Re-query CCDS DB by GeneID:54474See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000167588.4 ENSP00000167588.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000167588.4Link to Ensembl Protein Viewer:ENSP00000167588.3Re-query CCDS DB by Nucleotide ID:ENST00000167588Re-query CCDS DB by Protein ID:ENSP00000167588
Original member Current member NCBI NM_019010.3 NP_061883.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019010.3Link to Protein Sequence:NP_061883.1Re-query CCDS DB by Nucleotide ID:NM_019010Re-query CCDS DB by Protein ID:NP_061883Link to BLAST:NP_061883.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061883.1 424 P35900 424 100% 0 0

Chromosomal Locations for CCDS 11379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40876361 40876458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40877380 40877417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40878145 40878365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40879813 40879938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40880100 40880261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40880614 40880770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40882572 40882654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40884796 40885185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGATTTCAGTCGCAGAAGCTTCCACAGAAGCCTGAGCTCCTCCTTGCAGGCCCCTGTAGTCAGTACAG
TGGGCATGCAGCGCCTCGGGACGACACCCAGCGTTTATGGGGGTGCTGGAGGCCGGGGCATCCGCATCTC
CAACTCCAGACACACGGTGAACTATGGGAGCGATCTCACAGGCGGCGGGGACCTGTTTGTTGGCAATGAG
AAAATGGCCATGCAGAACCTAAATGACCGTCTAGCGAGCTACCTAGAAAAGGTGCGGACCCTGGAGCAGT
CCAACTCCAAACTTGAAGTGCAAATCAAGCAGTGGTACGAAACCAACGCCCCGAGGGCTGGTCGCGACTA
CAGTGCATATTACAGACAAATTGAAGAGCTGCGAAGTCAGATTAAGGATGCTCAACTGCAAAATGCTCGG
TGTGTCCTGCAAATTGATAATGCTAAACTGGCTGCTGAGGACTTCAGACTGAAGTATGAGACTGAGAGAG
GAATACGTCTAACAGTGGAAGCTGATCTCCAAGGCCTGAATAAGGTCTTTGATGACCTAACCCTACATAA
AACAGATTTGGAGATTCAAATTGAAGAACTGAATAAAGACCTAGCTCTCCTCAAAAAGGAGCATCAGGAG
GAAGTCGATGGCCTACACAAGCATCTGGGCAACACTGTCAATGTGGAGGTTGATGCTGCTCCAGGCCTGA
ACCTTGGCGTCATCATGAATGAAATGAGGCAGAAGTATGAAGTCATGGCCCAGAAGAACCTTCAAGAGGC
CAAAGAACAGTTTGAGAGACAGACTGCAGTTCTGCAGCAACAGGTCACAGTGAATACTGAAGAATTAAAA
GGAACTGAGGTTCAACTAACGGAGCTGAGACGCACCTCCCAGAGCCTTGAGATAGAACTCCAGTCCCATC
TCAGCATGAAAGAGTCTTTGGAGCACACTCTAGAGGAGACCAAGGCCCGTTACAGCAGCCAGTTAGCCAA
CCTCCAGTCGCTGTTGAGCTCTCTGGAGGCCCAACTGATGCAGATTCGGAGTAACATGGAACGCCAGAAC
AACGAATACCATATCCTTCTTGACATAAAGACTCGACTTGAACAGGAAATTGCTACTTACCGCCGCCTTC
TGGAAGGAGAAGACGTAAAAACTACAGAATATCAGTTAAGCACCCTGGAAGAGAGAGATATAAAGAAAAC
CAGGAAGATTAAGACAGTCGTGCAAGAAGTAGTGGATGGCAAGGTCGTGTCATCTGAAGTCAAAGAGGTG
GAAGAAAATATCTAA

Translation (424 aa):
MDFSRRSFHRSLSSSLQAPVVSTVGMQRLGTTPSVYGGAGGRGIRISNSRHTVNYGSDLTGGGDLFVGNE
KMAMQNLNDRLASYLEKVRTLEQSNSKLEVQIKQWYETNAPRAGRDYSAYYRQIEELRSQIKDAQLQNAR
CVLQIDNAKLAAEDFRLKYETERGIRLTVEADLQGLNKVFDDLTLHKTDLEIQIEELNKDLALLKKEHQE
EVDGLHKHLGNTVNVEVDAAPGLNLGVIMNEMRQKYEVMAQKNLQEAKEQFERQTAVLQQQVTVNTEELK
GTEVQLTELRRTSQSLEIELQSHLSMKESLEHTLEETKARYSSQLANLQSLLSSLEAQLMQIRSNMERQN
NEYHILLDIKTRLEQEIATYRRLLEGEDVKTTEYQLSTLEERDIKKTRKIKTVVQEVVDGKVVSSEVKEV
EENI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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