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Report for CCDS5356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5356.1 Public Homo sapiens 7 RPA3 24 110 108 CCDS HistoryNCBI Gene:6119Re-query CCDS DB by CCDS ID:5356.1Re-query CCDS DB by GeneID:6119See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5356.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223129.8 ENSP00000223129.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000223129.8Link to Ensembl Protein Viewer:ENSP00000223129.4Re-query CCDS DB by Nucleotide ID:ENST00000223129Re-query CCDS DB by Protein ID:ENSP00000223129
Original member Current member EBI ENST00000396682.6 ENSP00000379914.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396682.6Link to Ensembl Protein Viewer:ENSP00000379914.2Re-query CCDS DB by Nucleotide ID:ENST00000396682Re-query CCDS DB by Protein ID:ENSP00000379914
Original member Current member NCBI NM_002947.5 NP_002938.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002947.5Link to Protein Sequence:NP_002938.1Re-query CCDS DB by Nucleotide ID:NM_002947Re-query CCDS DB by Protein ID:NP_002938Link to BLAST:NP_002938.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002938.1 121 P35244 121 100% 0 0

Chromosomal Locations for CCDS 5356.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 7637000 7637082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7637864 7637972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7639070 7639144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7640320 7640418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGTGGACATGATGGACTTGCCCAGGTCGCGCATCAACGCCGGCATGCTAGCTCAATTCATCGACAAGC
CTGTCTGCTTCGTAGGGAGGCTGGAAAAGATTCATCCCACCGGAAAAATGTTTATTCTTTCAGATGGAGA
AGGAAAAAATGGAACCATCGAGTTGATGGAACCCCTTGATGAAGAAATCTCTGGAATTGTGGAAGTGGTT
GGAAGAGTAACCGCCAAGGCCACCATCTTGTGTACATCTTATGTCCAGTTTAAAGAAGATAGCCATCCTT
TTGATCTTGGACTTTACAATGAAGCTGTGAAAATTATCCATGACTTCCCTCAGTTTTATCCTTTAGGGAT
TGTGCAACATGATTGA

Translation (121 aa):
MVDMMDLPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVV
GRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPLGIVQHD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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