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Report for CCDS34000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34000.1 Public Homo sapiens 4 SMR3A 24 110 108 CCDS HistoryNCBI Gene:26952Re-query CCDS DB by CCDS ID:34000.1Re-query CCDS DB by GeneID:26952See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34000.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000226460.5 ENSP00000226460.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000226460.5Link to Ensembl Protein Viewer:ENSP00000226460.4Re-query CCDS DB by Nucleotide ID:ENST00000226460Re-query CCDS DB by Protein ID:ENSP00000226460
Original member Current member NCBI NM_012390.4 NP_036522.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012390.4Link to Protein Sequence:NP_036522.3Re-query CCDS DB by Nucleotide ID:NM_012390Re-query CCDS DB by Protein ID:NP_036522Link to BLAST:NP_036522.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036522.3 134 Q99954 134 100% 0 0

Chromosomal Locations for CCDS 34000.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70362116 70362169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70366644 70366994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGAAATCACTGACTTGGATCTTGGGCCTTTGGGCTCTTGCAGCGTGTTTCACACCTGGTGAGAGTCAAA
GAGGCCCCAGGGGACCATATCCACCTGGACCACTGGCTCCTCCTCCTCCACCATGTTTTCCTTTTGGAAC
AGGATTTGTTCCACCACCCCATCCTCCACCCTATGGTCCAGGGAGATTTCCACCACCCCTTTCTCCACCC
TATGGTCCAGGGAGAATCCCACCATCCCCTCCTCCACCCTATGGTCCAGGGAGAATTCAATCACACTCTC
TTCCTCCTCCTTATGGCCCAGGTTATCCACAGCCACCTTCCCAACCAAGACCCTATCCACCTGGACCTCC
ATTTTTCCCTGTAAATTCTCCAACTGATCCTGCCCTCCCTACTCCTGCACCCTAA

Translation (134 aa):
MKSLTWILGLWALAACFTPGESQRGPRGPYPPGPLAPPPPPCFPFGTGFVPPPHPPPYGPGRFPPPLSPP
YGPGRIPPSPPPPYGPGRIQSHSLPPPYGPGYPQPPSQPRPYPPGPPFFPVNSPTDPALPTPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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