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Report for CCDS3415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3415.1 Public Homo sapiens 4 FBXL5 24 110 108 CCDS HistoryNCBI Gene:26234Re-query CCDS DB by CCDS ID:3415.1Re-query CCDS DB by GeneID:26234See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341285.8 ENSP00000344866.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341285.8Link to Ensembl Protein Viewer:ENSP00000344866.3Re-query CCDS DB by Nucleotide ID:ENST00000341285Re-query CCDS DB by Protein ID:ENSP00000344866
Original member Current member NCBI NM_012161.4 NP_036293.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012161.4Link to Protein Sequence:NP_036293.1Re-query CCDS DB by Nucleotide ID:NM_012161Re-query CCDS DB by Protein ID:NP_036293Link to BLAST:NP_036293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036293.1 691 Q9UKA1-1 691 100% 0 0

Chromosomal Locations for CCDS 3415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15605723 15605799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15612266 15612414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15625252 15625977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15626873 15626955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15627885 15628033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15630666 15630791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15636494 15636676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15638508 15638694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15640788 15640883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15644493 15644708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15655204 15655287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGGCGCCCTTTCCTGAAGAAGTGGACGTCTTCACCGCCCCACACTGGCGGATGAAGCAGCTGGTGGGGC
TCTACTGCGACAAGCTTTCTAAAACCAATTTTTCCAACAACAACGATTTCCGTGCTCTTCTGCAGTCTTT
GTATGCTACTTTCAAGGAGTTCAAAATGCATGAGCAGATTGAAAATGAATACATTATTGGTTTGCTTCAA
CAACGCAGCCAGACCATTTATAATGTACATTCTGACAATAAACTCTCCGAGATGCTTAGCCTCTTTGAAA
AGGGACTGAAGAATGTTAAGAATGAATATGAACAGTTAAATTATGCAAAACAACTGAAAGAGAGATTGGA
GGCTTTTACAAGAGATTTTCTTCCTCACATGAAAGAGGAAGAGGAGGTTTTTCAGCCCATGTTAATGGAA
TATTTTACCTATGAAGAGCTTAAGGATATTAAAAAGAAAGTGATTGCACAACACTGCTCTCAGAAGGATA
CTGCAGAACTCCTTAGAGGTCTTAGCCTATGGAATCATGCTGAAGAGCGACAGAAGTTTTTTAAATATTC
CGTGGATGAAAAGTCAGATAAAGAAGCAGAAGTGTCAGAACACTCCACAGGTATAACCCATCTTCCTCCT
GAGGTAATGCTGTCAATTTTCAGCTATCTTAATCCTCAAGAGTTATGTCGATGCAGTCAAGTAAGCATGA
AATGGTCTCAGCTGACAAAAACGGGATCGCTTTGGAAACATCTTTACCCTGTTCATTGGGCCAGAGGTGA
CTGGTATAGTGGTCCCGCAACTGAACTTGATACTGAACCTGATGATGAATGGGTGAAAAATAGGAAAGAT
GAAAGTCGTGCTTTTCATGAGTGGGATGAAGATGCTGACATTGATGAATCTGAAGAGTCTGCGGAGGAAT
CAATTGCTATCAGCATTGCACAAATGGAAAAACGTTTACTCCATGGCTTAATTCATAACGTTCTACCATA
TGTTGGTACTTCTGTAAAAACCTTAGTATTAGCATACAGCTCTGCAGTTTCCAGCAAAATGGTTAGGCAG
ATTTTAGAGCTTTGTCCTAACCTGGAGCATCTGGATCTTACCCAGACTGACATTTCAGATTCTGCATTTG
ACAGTTGGTCTTGGCTTGGTTGCTGCCAGAGTCTTCGGCATCTTGATCTGTCTGGTTGTGAGAAAATCAC
AGATGTGGCCCTAGAGAAGATTTCCAGAGCTCTTGGAATTCTGACATCTCATCAAAGTGGCTTTTTGAAA
ACATCTACAAGCAAAATTACTTCAACTGCGTGGAAAAATAAAGACATTACCATGCAGTCCACCAAGCAGT
ATGCCTGTTTGCACGATTTAACTAACAAGGGCATTGGAGAAGAAATAGATAATGAACACCCCTGGACTAA
GCCTGTTTCTTCTGAGAATTTCACTTCTCCTTATGTGTGGATGTTAGATGCTGAAGATTTGGCTGATATT
GAAGATACTGTGGAATGGAGACATAGAAATGTTGAAAGTCTTTGTGTAATGGAAACAGCATCCAACTTTA
GTTGTTCCACCTCTGGTTGTTTTAGTAAGGACATTGTTGGACTAAGGACTAGTGTCTGTTGGCAGCAGCA
TTGTGCTTCTCCAGCCTTTGCGTATTGTGGTCACTCATTTTGTTGTACAGGAACAGCTTTAAGAACTATG
TCATCACTCCCAGAATCTTCTGCAATGTGTAGAAAAGCAGCAAGGACTAGATTGCCTAGGGGAAAAGACT
TAATTTACTTTGGGAGTGAAAAATCTGATCAAGAGACTGGACGTGTACTTCTGTTTCTCAGTTTATCTGG
ATGTTATCAGATCACAGACCATGGTCTCAGGGTTTTGACTCTGGGAGGAGGGCTGCCTTATTTGGAGCAC
CTTAATCTCTCTGGTTGTCTTACTATAACTGGTGCAGGCCTGCAGGATTTGGTTTCAGCATGTCCTTCTC
TGAATGATGAATACTTTTACTACTGTGACAACATTAACGGTCCTCATGCTGATACCGCCAGTGGATGCCA
GAATTTGCAGTGTGGTTTTCGAGCCTGCTGCCGCTCTGGCGAATGA

Translation (691 aa):
MAPFPEEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQ
QRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLME
YFTYEELKDIKKKVIAQHCSQKDTAELLRGLSLWNHAEERQKFFKYSVDEKSDKEAEVSEHSTGITHLPP
EVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLYPVHWARGDWYSGPATELDTEPDDEWVKNRKD
ESRAFHEWDEDADIDESEESAEESIAISIAQMEKRLLHGLIHNVLPYVGTSVKTLVLAYSSAVSSKMVRQ
ILELCPNLEHLDLTQTDISDSAFDSWSWLGCCQSLRHLDLSGCEKITDVALEKISRALGILTSHQSGFLK
TSTSKITSTAWKNKDITMQSTKQYACLHDLTNKGIGEEIDNEHPWTKPVSSENFTSPYVWMLDAEDLADI
EDTVEWRHRNVESLCVMETASNFSCSTSGCFSKDIVGLRTSVCWQQHCASPAFAYCGHSFCCTGTALRTM
SSLPESSAMCRKAARTRLPRGKDLIYFGSEKSDQETGRVLLFLSLSGCYQITDHGLRVLTLGGGLPYLEH
LNLSGCLTITGAGLQDLVSACPSLNDEYFYYCDNINGPHADTASGCQNLQCGFRACCRSGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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