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Report for CCDS30943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30943.1 Public Homo sapiens 1 TNN 24 110 108 CCDS HistoryNCBI Gene:63923Re-query CCDS DB by CCDS ID:30943.1Re-query CCDS DB by GeneID:63923See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239462.9 ENSP00000239462.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239462.9Link to Ensembl Protein Viewer:ENSP00000239462.4Re-query CCDS DB by Nucleotide ID:ENST00000239462Re-query CCDS DB by Protein ID:ENSP00000239462
Original member Current member NCBI NM_022093.2 NP_071376.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022093.2Link to Protein Sequence:NP_071376.1Re-query CCDS DB by Nucleotide ID:NM_022093Re-query CCDS DB by Protein ID:NP_071376Link to BLAST:NP_071376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071376.1 1299 Q9UQP3 1299 100% 0 0

Chromosomal Locations for CCDS 30943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175077419 175077827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175079333 175079707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175080163 175080426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175083750 175083935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175085405 175085494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175093990 175094253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175097417 175097683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175098332 175098595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175116939 175117205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175118561 175118824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175123400 175123663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175126955 175127085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175128032 175128164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175128595 175128746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175135845 175135941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175136821 175136988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175144387 175144550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175146931 175147071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3900 nt):
ATGAGTCTCCAGGAGATGTTCCGCTTCCCTATGGGGCTCCTGCTTGGCTCTGTGCTCCTGGTGGCTTCGG
CCCCAGCCACTCTGGAGCCTCCCGGCTGCAGCAACAAGGAGCAACAGGTCACTGTCAGCCACACCTACAA
GATCGATGTGCCCAAGTCTGCCTTGGTTCAGGTTGACGCTGACCCTCAGCCCCTCAGTGACGATGGGGCT
TCGCTCTTGGCCCTGGGGGAGGCCAGGGAGGAACAGAACATCATCTTCAGGCACAACATCCGCCTTCAGA
CGCCACAGAAGGACTGCGAGTTGGCAGGCAGTGTCCAGGACCTCCTGGCCCGGGTGAAGAAGCTGGAGGA
AGAGATGGTGGAGATGAAGGAACAGTGTAGTGCCCAGCGCTGCTGCCAGGGAGTCACTGATCTAAGCCGC
CACTGCAGCGGCCACGGGACCTTCTCCCTGGAGACCTGCAGCTGCCACTGCGAAGAGGGCAGGGAGGGCC
CCGCCTGCGAGCGGCTGGCCTGCCCCGGGGCGTGCAGCGGCCACGGGCGTTGCGTGGACGGGCGCTGCCT
GTGCCATGAGCCCTACGTGGGTGCCGACTGCGGCTACCCGGCCTGCCCTGAGAACTGCAGCGGACACGGC
GAGTGCGTGCGCGGCGTGTGCCAGTGCCACGAAGACTTCATGTCGGAGGACTGCAGCGAGAAGCGCTGTC
CCGGCGACTGCAGCGGCCACGGCTTCTGTGACACGGGCGAGTGCTACTGCGAGGAGGGCTTCACAGGCCT
GGACTGTGCCCAGGTGGTCACCCCACAGGGCCTGCAGCTGCTCAAGAACACGGAGGATTCTCTGCTGGTG
AGCTGGGAGCCCTCCAGCCAGGTGGATCACTACCTCCTCAGCTACTACCCCCTGGGGAAGGAGCTCTCTG
GGAAGCAGATCCAAGTGCCCAAGGAGCAGCACAGCTATGAGATTCTTGGTTTGCTGCCTGGAACCAAGTA
CATAGTCACCCTGCGTAACGTCAAGAATGAAGTTTCTAGCAGCCCACAGCATCTACTTGCCACCACAGAC
CTTGCTGTGCTTGGCACTGCCTGGGTGACAGATGAGACTGAGAACTCCCTTGACGTGGAGTGGGAAAACC
CCTCAACTGAGGTGGACTACTACAAGCTGCGATATGGCCCCATGACAGGACAGGAGGTAGCTGAGGTCAC
TGTGCCCAAGAGCAGTGACCCCAAGAGCCGATATGACATCACTGGTCTGCACCCGGGGACTGAGTATAAG
ATCACGGTGGTGCCCATGAGAGGAGAGCTGGAGGGCAAGCCGATCCTCCTGAATGGCAGGACAGAAATTG
ACAGTCCAACCAATGTTGTCACTGATCGAGTGACTGAAGACACAGCAACTGTCTCCTGGGACCCAGTGCA
GGCTGTCATAGACAAGTATGTAGTGCGCTACACTTCTGCTGATGGGGACACCAAGGAAATGGCAGTGCAC
AAGGATGAGAGCAGCACTGTCCTGACGGGCCTGAAGCCAGGAGAGGCATACAAGGTCTACGTGTGGGCTG
AAAGGGGCAACCAGGGGAGCAAGAAAGCTGACACCAATGCCCTCACAGAAATTGACAGCCCAGCAAACCT
GGTGACTGACCGGGTGACTGAGAATACCGCCACCATCTCCTGGGACCCGGTACAGGCCACCATTGACAAG
TACGTGGTGCGCTACACCTCTGCTGACGACCAAGAGACCAGAGAGGTTCTGGTGGGGAAGGAGCAGAGCA
GCACTGTCCTGACAGGCCTGAGGCCAGGTGTGGAGTACACAGTGCATGTCTGGGCCCAGAAGGGGGACCG
AGAGAGCAAGAAGGCTGACACCAACGCCCCGACAGATATTGACAGCCCCAAAAACCTGGTGACTGACCGG
GTGACAGAGAATATGGCCACGGTCTCCTGGGACCCGGTGCAGGCCGCCATTGACAAGTACGTGGTGCGCT
ACACCTCTGCTGGTGGAGAGACCAGGGAGGTTCCGGTGGGGAAGGAGCAGAGCAGCACAGTCCTGACAGG
CCTGAGACCGGGTATGGAGTACATGGTGCACGTGTGGGCCCAGAAGGGGGACCAGGAGAGCAAGAAGGCC
GACACCAAGGCCCAGACAGACATTGACAGCCCCCAAAACCTGGTGACCGACCGGGTGACAGAGAATATGG
CCACTGTCTCCTGGGACCCGGTGCGGGCCACCATTGACAGGTATGTGGTGCGCTACACCTCTGCCAAGGA
CGGAGAGACCAGGGAGGTTCCGGTGGGGAAGGAGCAGAGTAGCACTGTCCTGACGGGCCTGAGGCCGGGT
GTGGAGTACACGGTGCACGTGTGGGCCCAGAAGGGGGCCCAGGAGAGCAAGAAGGCTGACACCAAGGCCC
AGACAGACATTGACAGCCCCCAAAACCTGGTCACTGACTGGGTGACAGAGAATACAGCCACTGTCTCCTG
GGACCCGGTGCAGGCCACCATTGACAGGTATGTGGTGCACTACACGTCTGCCAACGGAGAGACCAGGGAG
GTTCCAGTGGGGAAGGAGCAGAGCAGCACTGTCCTGACGGGCCTGAGGCCGGGCATGGAGTACACGGTGC
ACGTGTGGGCCCAGAAGGGGAACCAGGAGAGCAAGAAGGCTGACACCAAGGCCCAGACAGAAATTGACGG
CCCCAAAAACCTAGTGACTGACTGGGTGACGGAGAATATGGCCACTGTCTCCTGGGACCCGGTTCAGGCC
ACCATTGACAAGTACATGGTGCGCTACACCTCTGCTGACGGAGAGACCAGGGAGGTTCCGGTGGGGAAGG
AGCACAGCAGCACTGTCCTGACGGGCCTGAGACCAGGCATGGAGTACATGGTGCACGTGTGGGCCCAGAA
GGGGGCCCAGGAGAGCAAGAAGGCTGACACCAAGGCCCAGACAGAACTCGACCCTCCCAGAAACCTTCGT
CCATCTGCTGTAACGCAGTCTGGTGGCATATTGACCTGGACGCCCCCCTCTGCTCAGATCCACGGCTACA
TTCTGACTTACCAGTTCCCAGATGGCACAGTTAAGGAGATGCAGCTGGGACGGGAAGACCAGAGGTTTGC
GTTGCAAGGCCTTGAGCAAGGCGCCACCTACCCTGTCTCCCTTGTTGCCTTTAAGGGTGGTCGCCGGAGC
AGAAATGTATCCACCACCCTCTCCACAGTTGGTGCCCGTTTCCCACACCCTTCGGACTGCAGTCAGGTTC
AGCAGAACAGCAATGCCGCCAGTGGTCTGTACACCATCTACCTGCATGGCGATGCCAGCCGGCCCCTGCA
GGTGTACTGTGACATGGAAACGGACGGAGGTGGCTGGATTGTCTTCCAGAGGCGGAACACTGGGCAGCTG
GATTTCTTCAAGCGATGGAGGAGCTATGTGGAAGGCTTTGGGGACCCCATGAAGGAGTTCTGGCTTGGAC
TTGACAAGCTACACAACCTCACCACCGGCACTCCAGCGCGGTATGAGGTGAGAGTGGATTTACAGACTGC
CAATGAATCTGCCTATGCTATATATGATTTCTTCCAAGTGGCCTCCAGCAAGGAGCGGTATAAGCTGACA
GTTGGGAAATACAGAGGCACGGCAGGGGATGCTCTTACTTACCACAATGGATGGAAGTTTACAACTTTTG
ACAGAGACAATGATATCGCACTCAGCAACTGTGCCCTGACACATCATGGTGGCTGGTGGTATAAGAACTG
CCACTTGGCCAACCCTAATGGCAGATATGGGGAGACCAAGCACAGTGAGGGGGTGAACTGGGAGCCTTGG
AAAGGACATGAATTCTCCATTCCTTACGTGGAGTTGAAAATCCGCCCTCATGGCTACAGCAGGGAGCCTG
TCCTGGGCAGAAAGAAGCGGACGCTGAGAGGAAGGCTGCGAACGTTCTGA

Translation (1299 aa):
MSLQEMFRFPMGLLLGSVLLVASAPATLEPPGCSNKEQQVTVSHTYKIDVPKSALVQVDADPQPLSDDGA
SLLALGEAREEQNIIFRHNIRLQTPQKDCELAGSVQDLLARVKKLEEEMVEMKEQCSAQRCCQGVTDLSR
HCSGHGTFSLETCSCHCEEGREGPACERLACPGACSGHGRCVDGRCLCHEPYVGADCGYPACPENCSGHG
ECVRGVCQCHEDFMSEDCSEKRCPGDCSGHGFCDTGECYCEEGFTGLDCAQVVTPQGLQLLKNTEDSLLV
SWEPSSQVDHYLLSYYPLGKELSGKQIQVPKEQHSYEILGLLPGTKYIVTLRNVKNEVSSSPQHLLATTD
LAVLGTAWVTDETENSLDVEWENPSTEVDYYKLRYGPMTGQEVAEVTVPKSSDPKSRYDITGLHPGTEYK
ITVVPMRGELEGKPILLNGRTEIDSPTNVVTDRVTEDTATVSWDPVQAVIDKYVVRYTSADGDTKEMAVH
KDESSTVLTGLKPGEAYKVYVWAERGNQGSKKADTNALTEIDSPANLVTDRVTENTATISWDPVQATIDK
YVVRYTSADDQETREVLVGKEQSSTVLTGLRPGVEYTVHVWAQKGDRESKKADTNAPTDIDSPKNLVTDR
VTENMATVSWDPVQAAIDKYVVRYTSAGGETREVPVGKEQSSTVLTGLRPGMEYMVHVWAQKGDQESKKA
DTKAQTDIDSPQNLVTDRVTENMATVSWDPVRATIDRYVVRYTSAKDGETREVPVGKEQSSTVLTGLRPG
VEYTVHVWAQKGAQESKKADTKAQTDIDSPQNLVTDWVTENTATVSWDPVQATIDRYVVHYTSANGETRE
VPVGKEQSSTVLTGLRPGMEYTVHVWAQKGNQESKKADTKAQTEIDGPKNLVTDWVTENMATVSWDPVQA
TIDKYMVRYTSADGETREVPVGKEHSSTVLTGLRPGMEYMVHVWAQKGAQESKKADTKAQTELDPPRNLR
PSAVTQSGGILTWTPPSAQIHGYILTYQFPDGTVKEMQLGREDQRFALQGLEQGATYPVSLVAFKGGRRS
RNVSTTLSTVGARFPHPSDCSQVQQNSNAASGLYTIYLHGDASRPLQVYCDMETDGGGWIVFQRRNTGQL
DFFKRWRSYVEGFGDPMKEFWLGLDKLHNLTTGTPARYEVRVDLQTANESAYAIYDFFQVASSKERYKLT
VGKYRGTAGDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNGRYGETKHSEGVNWEPW
KGHEFSIPYVELKIRPHGYSREPVLGRKKRTLRGRLRTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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