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Report for CCDS61403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61403.1 Public Homo sapiens 14 PPP1R3E 24 110 108 CCDS HistoryNCBI Gene:90673Re-query CCDS DB by CCDS ID:61403.1Re-query CCDS DB by GeneID:90673See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 61403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452015.9 ENSP00000408288.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452015.9Link to Ensembl Protein Viewer:ENSP00000408288.3Re-query CCDS DB by Nucleotide ID:ENST00000452015Re-query CCDS DB by Protein ID:ENSP00000408288
Original member Current member NCBI NM_001276318.2 NP_001263247.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001276318.2Link to Protein Sequence:NP_001263247.1Re-query CCDS DB by Nucleotide ID:NM_001276318Re-query CCDS DB by Protein ID:NP_001263247Link to BLAST:NP_001263247.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263247.1 279 Q9H7J1 279 100% 0 0

Chromosomal Locations for CCDS 61403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 23301436 23301858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23302160 23302576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGTCCCGTGAGCGGCCCCCGGGCACCGACATTCCCCGCAACCTGAGCTTCATCGCCGCGCTAACGGAGC
GCGCCTACTACCGTAGCCAGCGGCCCAGCCTCGAGGAGGAGCCGGAGGAGGAGCCAGGCGAGGGCGGGAC
GCGGTTCGGGGCCCGATCCCGCGCTCACGCACCGAGTCGGGGCCGCCGGGCCCGATCTGCACCAGCCGGA
GGCGGCGGGGCCCGGGCGCCCCGCAGCCGTAGCCCAGACACCCGCAAGAGAGTGCGTTTCGCCGACGCAC
TGGGGTTGGAGCTGGCTGTCGTGCGCCGCTTCCGTCCCGGTGAGCTGCCCCGGGTGCCCCGCCACGTGCA
GATCCAATTGCAGAGGGACGCCCTCCGCCACTTCGCGCCCTGCCAGCCCCGCGCCCGCGGCCTCCAGGAG
GCGCGCGCCGCCCTGGAGCCGGCCAGCGAGCCCGGCTTCGCCGCCCGCTTGCTGACGCAGCGCATCTGCC
TGGAACGCGCCGAGGCGGGCCCGCTGGGCGTGGCCGGGAGCGCGCGCGTGGTGGACCTGGCCTACGAGAA
GCGCGTGAGCGTGCGCTGGAGCGCCGACGGCTGGCGGAGCCAACGCGAGGCGCCAGCCGCCTACGCCGGT
CCGGCCCCGCCCCCGCCGCGCGCCGACCGCTTCGCCTTCCGCCTGCCCGCGCCGCCGATTGGGGGCGCCC
TGCTCTTCGCCTTGCGCTACCGTGTGACAGGTCACGAGTTCTGGGACAACAACGGCGGCCGTGACTATGC
TCTACGTGGGCCCGAGCACCCGGGCAGTGGCGGAGCTCCGGAGCCGCAGGGCTGGATCCACTTTATCTGA

Translation (279 aa):
MSRERPPGTDIPRNLSFIAALTERAYYRSQRPSLEEEPEEEPGEGGTRFGARSRAHAPSRGRRARSAPAG
GGGARAPRSRSPDTRKRVRFADALGLELAVVRRFRPGELPRVPRHVQIQLQRDALRHFAPCQPRARGLQE
ARAALEPASEPGFAARLLTQRICLERAEAGPLGVAGSARVVDLAYEKRVSVRWSADGWRSQREAPAAYAG
PAPPPPRADRFAFRLPAPPIGGALLFALRYRVTGHEFWDNNGGRDYALRGPEHPGSGGAPEPQGWIHFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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