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Report for CCDS3081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3081.1 Public Homo sapiens 3 SRPRB 24 110 108 CCDS HistoryNCBI Gene:58477Re-query CCDS DB by CCDS ID:3081.1Re-query CCDS DB by GeneID:58477See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000466490.7 ENSP00000418401.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466490.7Link to Ensembl Protein Viewer:ENSP00000418401.1Re-query CCDS DB by Nucleotide ID:ENST00000466490Re-query CCDS DB by Protein ID:ENSP00000418401
Original member Current member EBI ENST00000678299.1 ENSP00000503923.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000678299.1Link to Ensembl Protein Viewer:ENSP00000503923.1Re-query CCDS DB by Nucleotide ID:ENST00000678299Re-query CCDS DB by Protein ID:ENSP00000503923
Original member Current member NCBI NM_001379313.1 NP_001366242.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001379313.1Link to Protein Sequence:NP_001366242.1Re-query CCDS DB by Nucleotide ID:NM_001379313Re-query CCDS DB by Protein ID:NP_001366242Link to BLAST:NP_001366242.1
Original member Current member NCBI NM_021203.4 NP_067026.3 Accepted alive Link to Nucleotide Sequence:NM_021203.4Link to Protein Sequence:NP_067026.3Re-query CCDS DB by Nucleotide ID:NM_021203Re-query CCDS DB by Protein ID:NP_067026Link to BLAST:NP_067026.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001366242.1 271 Q9Y5M8 271 100% 0 0
NP_067026.3 271 Q9Y5M8 271 100% 0 0

Chromosomal Locations for CCDS 3081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 133805849 133806002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133806609 133806703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133807746 133807823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133811117 133811199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133815590 133815726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133816878 133816932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133819553 133819766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGCTTCCGCGGACTCGCGCCGGGTGGCAGATGGCGGCGGTGCCGGGGGCACCTTCCAGCCCTACCTAG
ACACCTTGCGGCAGGAGCTGCAGCAGACGGACCCAACGCTGTTGTCAGTAGTGGTGGCGGTTCTTGCGGT
GCTGCTGACGCTAGTCTTCTGGAAGTTAATCCGGAGCAGAAGGAGCAGTCAGAGAGCTGTTCTTCTTGTT
GGCCTTTGTGATTCCGGGAAAACGTTGCTCTTTGTCAGGTTGTTAACAGGCCTTTATAGAGACACTCAGA
CGTCCATTACTGACAGCTGTGCTGTATACAGAGTCAACAATAACAGGGGCAATAGTCTGACCTTGATTGA
CCTTCCCGGCCATGAGAGTTTGAGGCTTCAGTTCTTAGAGCGGTTTAAGTCTTCAGCCAGGGCTATTGTG
TTTGTTGTGGATAGTGCAGCATTCCAGCGAGAGGTGAAAGATGTGGCTGAGTTTCTGTATCAAGTCCTCA
TTGACAGTATGGGTCTGAAGAATACACCATCATTCTTAATAGCCTGCAATAAGCAAGATATTGCAATGGC
AAAATCAGCAAAGTTAATTCAACAGCAGCTGGAGAAAGAACTCAACACCTTACGAGTTACCCGTTCTGCT
GCCCCCAGCACACTGGACAGTTCCAGCACTGCCCCTGCTCAGCTGGGGAAGAAAGGCAAAGAGTTTGAAT
TCTCACAGTTGCCCCTCAAAGTGGAGTTCCTGGAGTGCAGTGCCAAGGGTGGAAGAGGGGACGTGGGCTC
TGCTGACATCCAGGACTTGGAGAAATGGCTGGCTAAAATTGCCTGA

Translation (271 aa):
MASADSRRVADGGGAGGTFQPYLDTLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLV
GLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSARAIV
FVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSA
APSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADIQDLEKWLAKIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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