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Report for CCDS25783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25783.1 Public Mus musculus 12 Kif3c 23 108 98 CCDS HistoryNCBI Gene:16570Re-query CCDS DB by CCDS ID:25783.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020999.6 ENSMUSP00000020999.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020999.6Link to Ensembl Protein Viewer:ENSMUSP00000020999.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020999Re-query CCDS DB by Protein ID:ENSMUSP00000020999
Original member Current member EBI ENSMUST00000220210.1 ENSMUSP00000151286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220210.1Link to Ensembl Protein Viewer:ENSMUSP00000151286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220210Re-query CCDS DB by Protein ID:ENSMUSP00000151286
Original member Current member NCBI NM_008445.2 NP_032471.2 Accepted alive Link to Nucleotide Sequence:NM_008445.2Link to Protein Sequence:NP_032471.2Re-query CCDS DB by Nucleotide ID:NM_008445Re-query CCDS DB by Protein ID:NP_032471Link to BLAST:NP_032471.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032471.2 796 O35066 796 100% 0 0

Chromosomal Locations for CCDS 25783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 3365981 3367531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3387552 3387653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3388135 3388257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3389623 3389741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3390438 3390554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3401683 3401791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3402434 3402606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3402789 3402885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGGCCAGTAAGACCAAGGCCAGCGAGGCCCTGAAGGTGGTGGCCCGGTGCCGCCCCCTCAGTAGGAAGG
AGGAGGCTGCTGGTCATGAGCAGATTCTGACCATGGACGTGAAACTGGGCCAGGTGACTCTGCGAAACCC
CCGCGCGGCACCCGGGGAGCTGCCCAAGACCTTCACTTTTGATGCTGTGTATGATGCTAGCTCCAAGCAG
GCCGACCTGTATGACGAAACGGTGAGGCCCCTGATAGACTCAGTGCTTCAGGGTTTCAACGGCACCGTAT
TTGCCTATGGCCAGACTGGCACTGGCAAGACCTACACCATGCAGGGGACCTGGGTGGAGCCAGAGCTCCG
CGGGGTTATCCCGAATGCCTTTGAGCACATCTTCACCCACATCTCCCGCTCCCAGAACCAGCAGTACCTG
GTTCGTGCTTCCTACTTGGAGATCTACCAGGAGGAGATCCGAGACCTGCTATCCAAGGAGCCAGGCAAGA
GGCTAGAGCTGAAGGAGAATCCTGAAACAGGGGTCTACATCAAGGACCTCTCTTCCTTTGTCACCAAGAA
TGTCAAGGAGATTGAGCATGTGATGAACCTGGGGAACCAAGCCCGAGCAGTGGGCAGCACCCACATGAAT
GAGGTCAGCTCTCGGTCCCATGCCATCTTTGTTATCACAGTGGAGTGCAGTGAGCGTGGCTCTGATGGCC
AGGATCATATCCGAGTAGGCAAGCTCAACCTGGTAGACCTGGCCGGCAGTGAGAGACAGAACAAGGCTGG
TCCCAACGCAGCTGGAGGGCCAGCCACACAGCCAACAGCTGGTGGTGGGAGTGGAAGTGGCAGCGCTAGT
GGTTCTGCCAGCAGCGGAGAGAGGCCTAAGGAAGCTTCTAAAATCAATCTCTCGCTGTCCGCCCTGGGCA
ATGTGATTGCTGCTCTGGCTGGCAACAGGAGCACCCACATCCCCTACCGGGACTCCAAGCTAACCCGGCT
GCTCCAAGACTCACTGGGGGGCAATGCCAAGACCATCATGGTGGCCACACTGGGTCCAGCTTCTCACAGC
TACGACGAGAGCCTCTCTACCCTGCGCTTTGCCAACCGAGCCAAGAACATCAAGAACAAACCGCGGGTGA
ACGAGGACCCCAAGGACACACTGCTGAGGGAATTCCAGGAAGAGATCGCTCGCTTGAAGGCCCAGCTGGA
GAAGAAGGGGATGCTGGGCAAGCGACCTCGGAGAAAGAGCAGTCGTAGAAAGAAGGCCGTGTCTGCCCCA
GCCGGCTATCCAGAGGGGTCCGTGATTGAGGCCTGGGTGGCCGAAGAGGAAGATGATAACAACAACAATC
ACCACCCACCCCAGCCCATCTTGGAGGCAGCTTTGGAGAAGAACATGGAGAATTACCTGCAGGACCAGAA
GGAACGGCTGGAGGAGGAGAAGGCTGCCATCCAGGATGACCGCAGCCTTGTGAGTGAGGAGAAGCAGAAG
CTTCTAGAAGAGAAGGAGAAGATGCTGGAGGATCTACGGCGGGAGCAGCAGGCTACAGAGCTGCTTGCAG
CCAAGTACAAGGCCATGGAAAGCAAGCTACTCATTGGGGGGCGGAACATCATGGATCACACCAACGAGCA
ACAGAAGATGTTGGAACTGAAGCGACAGGAGATTGCGGAACAGAAACGCCGTGAACGGGAAATGCAGCAG
GAGATGCTGCTCCGCGATGAAGAAACCATGGAGCTACGTGGTACCTACTCATCCCTGCAGCAGGAGGTGG
AAGTTAAAACCAAGAAACTCAAGAAGCTCTATGCCAAGCTACAGGCGGTGAAGGCCGAGATCCAGGACCA
ACACGAAGAGTACATCCGCGTGCGGCAGGACCTGGAGGAGGCGCAGAATGAGCAGACCCGGGAACTAAAG
CTCAAGTACCTCATCATTGAGAACTTCATCCCCCCTGAGGAGAAGAACAAGATCATGAACCGCCTTTTCC
TGGACTGTGAGGAGGAGCAGTGGAGGTTCCAGCCACTGGTGCCAGCTGGAGTGAATAACAGCCAAATGAA
GAAGCGTCCAACTTCTGCGGTGGGCTACAAGAGACCTATCAGCCAGTATGCTCGGGTTGCCATGGCAATG
GGGTCCCATCCCAGATACAGAGCTGAAAATATAATGTTTTTGGAACTGGATGTGTCCCCACCGGCTATCT
TTGAGATGGAGTTTTCTCATGACCAAGAGCAAGACCCACGGGTACTACACATGGAGAGGCTCATGAGGTT
GGACAGCTTTCTGGAAAGACCGTCCACAACTAAAGTGCGAAAGTCGAGATCCTGGTGCCAGAGTCCTCAG
CGGATGCCTCCACCCTCCACAGCTCATGCATCCATGACCTCTGTTCCTTTGCACCCTGCAACAGTGGTAG
ACCATGACTGA

Translation (796 aa):
MASKTKASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQ
ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTHISRSQNQQYL
VRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQARAVGSTHMN
EVSSRSHAIFVITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNAAGGPATQPTAGGGSGSGSAS
GSASSGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHS
YDESLSTLRFANRAKNIKNKPRVNEDPKDTLLREFQEEIARLKAQLEKKGMLGKRPRRKSSRRKKAVSAP
AGYPEGSVIEAWVAEEEDDNNNNHHPPQPILEAALEKNMENYLQDQKERLEEEKAAIQDDRSLVSEEKQK
LLEEKEKMLEDLRREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKMLELKRQEIAEQKRREREMQQ
EMLLRDEETMELRGTYSSLQQEVEVKTKKLKKLYAKLQAVKAEIQDQHEEYIRVRQDLEEAQNEQTRELK
LKYLIIENFIPPEEKNKIMNRLFLDCEEEQWRFQPLVPAGVNNSQMKKRPTSAVGYKRPISQYARVAMAM
GSHPRYRAENIMFLELDVSPPAIFEMEFSHDQEQDPRVLHMERLMRLDSFLERPSTTKVRKSRSWCQSPQ
RMPPPSTAHASMTSVPLHPATVVDHD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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