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Report for CCDS53416.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53416.2 Public Homo sapiens 1 FCRLA 24 110 108 CCDS HistoryNCBI Gene:84824Re-query CCDS DB by CCDS ID:53416.2Re-query CCDS DB by GeneID:84824See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53416.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294796.8 ENSP00000294796.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000294796.8Link to Ensembl Protein Viewer:ENSP00000294796.4Re-query CCDS DB by Nucleotide ID:ENST00000294796Re-query CCDS DB by Protein ID:ENSP00000294796
Original member Current member NCBI NM_001184870.2 NP_001171799.2 Accepted alive Link to Nucleotide Sequence:NM_001184870.2Link to Protein Sequence:NP_001171799.2Re-query CCDS DB by Nucleotide ID:NM_001184870Re-query CCDS DB by Protein ID:NP_001171799Link to BLAST:NP_001171799.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171799.2 225 Q7L513-4 225 100% 0 0

Chromosomal Locations for CCDS 53416.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161707265 161707343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161710475 161710492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161711934 161712218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161713085 161713380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGAAGCTGGGCTGTGTCCTCATGGCCTGGGCCCTCTACCTTTCCCTTGGTGTGCTCTGGGTGGCCCAGA
TGCTACTGGCAGCTGGATGTCATGCCGAACTGTTTCCAGCGCCAATTCTCAGAGCTGTACCCTCAGCTGA
ACCCCAAGCAGGAAGCCCCATGACCCTGAGTTGTCAGACAAAGTTGCCCCTGCAGAGGTCAGCTGCCCGC
CTCCTCTTCTCCTTCTACAAGGATGGAAGGATAGTGCAAAGCAGGGGGCTCTCCTCAGAATTCCAGATCC
CCACAGCTTCAGAAGATCACTCCGGGTCATACTGGTGTGAGGCAGCCACTGAGGACAACCAAGTTTGGAA
ACAGAGCCCCCAGCTAGAGATCAGAGTGCAGGGTGCTTCCAGCTCTGCTGCACCTCCCACATTGAATCCA
GCTCCTCAGAAATCAGCTGCTCCAGGAACTGCTCCTGAGGAGGCCCCTGGGCCTCTGCCTCCGCCGCCAA
CCCCATCTTCTGAGGATCCAGGCTTTTCTTCTCCTCTGGGGATGCCAGATCCTCATCTGTATCACCAGAT
GGGCCTTCTTCTCAAACACATGCAGGATGTGAGAGTCCTCCTCGGTCACCTGCTCATGGAGTTGAGGGAA
TTATCTGGCCACCGGAAGCCTGGGACCACAAAGGCTACTGCTGAATAG

Translation (225 aa):
MKLGCVLMAWALYLSLGVLWVAQMLLAAGCHAELFPAPILRAVPSAEPQAGSPMTLSCQTKLPLQRSAAR
LLFSFYKDGRIVQSRGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQGASSSAAPPTLNP
APQKSAAPGTAPEEAPGPLPPPPTPSSEDPGFSSPLGMPDPHLYHQMGLLLKHMQDVRVLLGHLLMELRE
LSGHRKPGTTKATAE


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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