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Report for CCDS22086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22086.1 Public Mus musculus 8 Cers4 23 108 98 CCDS HistoryNCBI Gene:67260Re-query CCDS DB by CCDS ID:22086.1Re-query CCDS DB by GeneID:67260See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008350.15 ENSMUSP00000008350.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008350.15Link to Ensembl Protein Viewer:ENSMUSP00000008350.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000008350Re-query CCDS DB by Protein ID:ENSMUSP00000008350
Original member Current member NCBI NM_026058.4 NP_080334.3 Accepted alive Link to Nucleotide Sequence:NM_026058.4Link to Protein Sequence:NP_080334.3Re-query CCDS DB by Nucleotide ID:NM_026058Re-query CCDS DB by Protein ID:NP_080334Link to BLAST:NP_080334.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080334.3 393 Q9D6J1 393 100% 0 0

Chromosomal Locations for CCDS 22086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4515556 4515728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4516873 4516990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4518240 4518358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4518603 4518660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4519463 4519513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4520216 4520308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4520554 4520682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4521174 4521280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4523354 4523510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4523604 4523780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGTCGTTCAGCTTGAGTGAGTGGCTGTGGCAGGAGACATACTGGTTACCACCCAATGTCACATGGGCAG
AGCTGGAGGACCGTGATGGCCTGGTGTTCGCCCACCCTCACCACGTGCTTGCTGCCTTCCCAGTGGCTCT
GGTCCTGGTGGCTGTGCGAATTGTCTTTGAGAGATTTGTGGCCTTGCCCCTGAGCCGGTGGATGGGTGTG
CAGGATCCAATCAGGAGAAAGATAAAGCCCAACCCGGTGCTGGAGAAGTACTTCCTCAGGATGAAGCAGT
GTCCAGAGGAGACACAGATGGTCCTGCTGGCTTCCCAGTGTGGCCTCACGCTTCGGCAGACTCAACGCTG
GTTCAGGAGACGTCGGAACCAGGATCGGCCTTCCTTATCCAAGAAATTCTGTGAAGCCTGCTGGAGGTTT
GTCTTCTATCTGTGTTCCTTCGTGGGTGGCACCTCCATCCTCTACCATGAATCATGGTTGTGGTCGCCAT
CATTGTGCTGGGAGAATTACCCACATCAGACCCTGAATTTGTCCCTGTACTGGTGGTACCTCCTGGAGCT
GGGCTTCTACCTTTCACTGCTGATCACTTTGCCCTTTGATGTCAAACGCAAGGACTTCAAGGAGCAGGTG
GTGCACCATTTTGTGGCCGTGGGACTGATAGGCTTCTCCTACAGCGTCAACTTGCTCCGCATTGGCGCTG
TGGTACTGTTGTTGCATGACTGCTCCGACTACCTGCTGGAGGGTTGTAAGATTCTCAACTATGCCCACTT
TAGGCGAGGGTGCGATGCTCTCTTCATCATGTTTGCCTTAGTCTTCTTCTACACGCGCCTCATATTCTTC
CCCACCCAGGTCATCTACACGTCTGTGTATGACTCCATCAAGAACTCGGGCCCCTTCTTTGGCTACTACT
TCTTTATTGTGCTCTTGGTGATGCTACAGATTCTTCATGTGTACTGGTTCTGCCTCATCCTGCGCATGCT
CTACAGTTTCCTGCATAAGGGTCAGATGACAGAGGACATTCGTAGCGATGTGGAAGAACCAGACTCCAGT
GATGACGAGCCAGTTTCTGAAGGTCCACAGCTGAAGAATGGGATGGCTCGAGGGTCTAGAGTAGCTGTTA
CCAATGGCCCGCGGAGCCGGGCAGCAGCATGCCTGACCAATGGGCACACCCGGGCCACATAG

Translation (393 aa):
MSFSLSEWLWQETYWLPPNVTWAELEDRDGLVFAHPHHVLAAFPVALVLVAVRIVFERFVALPLSRWMGV
QDPIRRKIKPNPVLEKYFLRMKQCPEETQMVLLASQCGLTLRQTQRWFRRRRNQDRPSLSKKFCEACWRF
VFYLCSFVGGTSILYHESWLWSPSLCWENYPHQTLNLSLYWWYLLELGFYLSLLITLPFDVKRKDFKEQV
VHHFVAVGLIGFSYSVNLLRIGAVVLLLHDCSDYLLEGCKILNYAHFRRGCDALFIMFALVFFYTRLIFF
PTQVIYTSVYDSIKNSGPFFGYYFFIVLLVMLQILHVYWFCLILRMLYSFLHKGQMTEDIRSDVEEPDSS
DDEPVSEGPQLKNGMARGSRVAVTNGPRSRAAACLTNGHTRAT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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