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Report for CCDS3039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3039.1 Public Homo sapiens 3 CHST13 24 110 108 CCDS HistoryNCBI Gene:166012Re-query CCDS DB by CCDS ID:3039.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3039.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319340.7 ENSP00000317404.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319340.7Link to Ensembl Protein Viewer:ENSP00000317404.2Re-query CCDS DB by Nucleotide ID:ENST00000319340Re-query CCDS DB by Protein ID:ENSP00000317404
Original member Current member NCBI NM_152889.3 NP_690849.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152889.3Link to Protein Sequence:NP_690849.1Re-query CCDS DB by Nucleotide ID:NM_152889Re-query CCDS DB by Protein ID:NP_690849Link to BLAST:NP_690849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690849.1 341 Q8NET6-1 341 100% 0 0

Chromosomal Locations for CCDS 3039.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126524333 126524429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126536271 126536353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126541733 126542578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGGGAGGCGCTGCTGCCGGCGGCGCGTGCTGGCGGCCGCCTGTCTGGGCGCCGCGCTCCTGCTCCTAT
GCGCCGCGCCCCGCTCCCTGCGCCCGGCATTTGGAAACAGAGCCCTGGGCTCCAGCTGGCTTGGTGGGGA
GAAGAGAAGCCCCCTGCAGAAGCTCTATGACCTGGATCAGGACCCGCGCTCGACCCTGGCGAAGGTGCAC
CGGCAGCGGCGCGACCTGCTGAACAGCGCCTGTAGCCGCCACTCACGCCGGCAGCGCCTGCTACAGCCGG
AGGACCTGCGGCACGTGCTGGTGGACGACGCGCATGGCCTGCTCTACTGCTACGTGCCCAAGGTGGCCTG
CACCAACTGGAAGCGCGTGCTGCTGGCGCTGAGCGGCCAAGCCCGCGGCGACCCGCGCGCCATCTCCGCG
CAAGAGGCGCACGCGCCTGGCCGCCTGCCCTCACTGGCCGACTTCAGCCCCGCCGAGATCAACCGGCGCC
TGCGCGCCTACTTGGCCTTCCTGTTCGTGCGGGAGCCCTTCGAGCGCCTGGCATCGGCTTACCGCAACAA
GCTCGCGCGCCCCTACAGCGCCGCCTTCCAGAGGCGCTACGGTGCACGCATCGTTCAGCGCCTGCGGCCG
CGCGCGCTCCCCGACGCCCGGGCCCGCGGCCACGACGTGCGCTTCGCGGAGTTCCTGGCCTACCTGCTGG
ACCCGCGCACGCGGCGTGAGGAGCCCTTCAACGAGCACTGGGAGCGCGCGCACGCGCTCTGCCACCCGTG
TCGCCTCCGCTACGACGTCGTGGGCAAGTTCGAGACGCTGGCGGAGGACGCGGCCTTCGTGCTGGGCCTG
GCGGGCGCATCCGACCTGAGCTTCCCTGGGCCGCCGCGGCCCCGGGGAGCCGCCGCCTCCCGCGACCTGG
CAGCGCGCCTCTTCCGGGACATCAGCCCCTTCTACCAGCGGCGCCTCTTCGACCTCTACAAGATGGACTT
CCTGCTTTTCAACTACTCCGCCCCCTCCTACCTGCGGCTGCTCTAG

Translation (341 aa):
MGRRCCRRRVLAAACLGAALLLLCAAPRSLRPAFGNRALGSSWLGGEKRSPLQKLYDLDQDPRSTLAKVH
RQRRDLLNSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISA
QEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLASAYRNKLARPYSAAFQRRYGARIVQRLRP
RALPDARARGHDVRFAEFLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGL
AGASDLSFPGPPRPRGAAASRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYLRLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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