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Report for CCDS29967.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29967.2 Public Mus musculus X Syp 23 108 98 CCDS HistoryNCBI Gene:20977Re-query CCDS DB by CCDS ID:29967.2Re-query CCDS DB by GeneID:20977See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 29967.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29967.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069520.10 ENSMUSP00000069429.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069520.10Link to Ensembl Protein Viewer:ENSMUSP00000069429.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069520Re-query CCDS DB by Protein ID:ENSMUSP00000069429
Original member Current member NCBI NM_009305.2 NP_033331.2 Accepted alive Link to Nucleotide Sequence:NM_009305.2Link to Protein Sequence:NP_033331.2Re-query CCDS DB by Nucleotide ID:NM_009305Re-query CCDS DB by Protein ID:NP_033331Link to BLAST:NP_033331.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033331.2 314 Q62277 314 100% 0 0

Chromosomal Locations for CCDS 29967.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7638693 7638728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7639858 7639923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7641097 7641221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7644101 7644299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7645008 7645199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7648557 7648883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGCTGCTGCTGGCAGACATGGACGTGGTGAATCAGCTGGTGGCTGGGGGTCAGTTCCGGGTGGTCAAGG
AGCCCCTTGGCTTCGTGAAGGTGCTGCAGTGGGTCTTTGCCATCTTCGCCTTTGCTACGTGCGGCAGCTA
CACCGGAGAGCTTCGGCTGAGCGTGGAGTGTGCCAACAAGACGGAGAGTGCCCTCAACATCGAAGTCGAA
TTTGAGTACCCATTCAGGCTGCACCAAGTGTACTTTGATGCACCCTCCTGCGTTAAAGGGGGCACTACCA
AGATCTTCCTAGTTGGTGACTACTCCTCCTCGGCTGAATTCTTTGTCACCGTGGCTGTGTTTGCCTTCCT
CTACTCCATGGGGGCCCTGGCCACCTACATCTTCCTGCAGAACAAGTACCGAGAGAACAACAAAGGGCCA
ATGATGGACTTCCTGGCCACAGCAGTGTTCGCTTTCATGTGGCTAGTTAGCTCATCCGCCTGGGCCAAAG
GCCTGTCCGATGTGAAGATGGCCACTGACCCAGAGAACATTATCAAGGAGATGCCTATGTGCCGCCAGAC
AGGAAACACATGCAAGGAACTGAGGGACCCTGTGACTTCAGGACTCAACACCTCGGTGGTGTTTGGCTTC
CTGAACCTGGTGCTCTGGGTTGGCAACCTATGGTTCGTGTTCAAGGAGACAGGCTGGGCCGCCCCATTCA
TGCGCGCACCTCCAGGCGCCCCAGAAAAGCAACCAGCTCCTGGCGATGCCTACGGCGATGCGGGCTATGG
GCAGGGCCCCGGAGGCTATGGGCCCCAGGACTCCTACGGGCCTCAGGGTGGTTATCAACCCGATTACGGG
CAGCCAGCCAGCGGCGGTGGCGGTGGCTACGGGCCTCAGGGCGACTATGGGCAGCAAGGCTACGGCCAAC
AGGGTGCGCCCACCTCCTTCTCCAATCAGATGTAA

Translation (314 aa):
MLLLADMDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYTGELRLSVECANKTESALNIEVE
FEYPFRLHQVYFDAPSCVKGGTTKIFLVGDYSSSAEFFVTVAVFAFLYSMGALATYIFLQNKYRENNKGP
MMDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPMCRQTGNTCKELRDPVTSGLNTSVVFGF
LNLVLWVGNLWFVFKETGWAAPFMRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYG
QPASGGGGGYGPQGDYGQQGYGQQGAPTSFSNQM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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