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Report for CCDS25413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25413.1 Public Mus musculus 11 Krt14 23 108 98 CCDS HistoryNCBI Gene:16664Re-query CCDS DB by CCDS ID:25413.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007272.7 ENSMUSP00000007272.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007272.7Link to Ensembl Protein Viewer:ENSMUSP00000007272.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000007272Re-query CCDS DB by Protein ID:ENSMUSP00000007272
Original member Current member NCBI NM_016958.2 NP_058654.1 Accepted alive Link to Nucleotide Sequence:NM_016958.2Link to Protein Sequence:NP_058654.1Re-query CCDS DB by Nucleotide ID:NM_016958Re-query CCDS DB by Protein ID:NP_058654Link to BLAST:NP_058654.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058654.1 484 Q61781 484 100% 0 0

Chromosomal Locations for CCDS 25413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100203312 100203409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100203956 100204020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100204108 100204328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100204424 100204549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100204633 100204794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100204948 100205104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100205621 100205703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100206913 100207455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGCCACCTGCAGCCGCCAGTTCACCTCCTCCAGCTCCATGAAGGGCTCTTGTGGTATCGGTGGTGGCT
CTAGCCGCATGTCCTCCATCCTGGCTGGAGGATCCTGCCGGGCTCCCAGCACCTACGGGGGCATGTCGGT
TACCTCCTCTCGCTTCTCCTCTGGGGGAGCCTGTGGGATTGGAGGTGGCTATGGTGGGAGCTTCAGCAGC
AGCAGTTTTGGTGGAGGACTTGGTAGTGGATTTGGTGGTCGATTTGATGGATTTGGTGGTGGTTTTGGTG
GTGGTCTTGGTGGTGGTTTTGGTGGTGGTCTTGGTGGTGGTCTTGGCGGTGGTATTGGTGATGGGCTCCT
GGTGGGCAGTGAGAAAGTGACCATGCAGAACCTCAATGACCGCCTGGCCACCTACCTGGACAAGGTGCGT
GCCCTGGAAGAGGCCAACACTGAACTGGAGGTGAAGATTCGGGACTGGTACCAGAGGCAGCGGCCCACTG
AGATCAAAGACTACAGCCCCTACTTCAAGACCATCGAGGACCTGAAGAGCAAGATCCTGGCAGCCACCGT
GGACAATGCCAATGTCCTCCTGCAGATCGACAATGCCCGCCTGGCTGCCGATGACTTCCGGACCAAGTTT
GAGACGGAGCAGAGCCTGCGCATGAGCGTGGAGGCCGACATCAATGGCCTGCGCAGGGTGCTGGATGAGC
TGACCCTGGCCAGAGCCGACCTGGAGATGCAGATTGAGAGCCTCAAGGAGGAGCTGGCCTACCTGAAGAA
GAACCACGAGGAGGAAATGGCCTCCATGAGAGGCCAGGTGGGTGGAGACGTCAATGTGGAGATGGACGCC
GCCCCTGGTGTGGACCTGAGCCGCATCCTGAACGAGATGCGGGATCAGTACGAGAAGATGGCGGAGAAGA
ACCGCAAGGATGCTGAGGAATGGTTCTTCAGCAAGACAGAGGAGCTGAACCGCGAGGTGGCCACCAACAG
CGAGCTGGTGCAGAGCGGCAAGAGTGAGATTTCTGAGCTCCGGCGCACCATGCAGAACCTGGAGATCGAG
CTGCAGTCCCAGCTCAGCATGAAAGCATCCCTGGAGAATAACCTGGAGGAGACCAAAGGCCGTTACTGCA
TGCAGCTGGCCCAGATCCAGGAGATGATCGGCAGTGTGGAGGAGCAGCTGGCTCAGCTGCGCTGCGAGAT
GGAGCAGCAGAACCAGGAGTACAAAATCCTGCTGGATGTGAAGACAAGGCTGGAGCAGGAGATCGCCACC
TACCGCCGTCTGCTGGAGGGAGAGGACGCCCACCTTTCATCTTCCCAATTCTCCTCATCCTCTCAATTCT
CCTCTGGCTCTCAGTCATCCAGAGATGTGACCTCCACCAACCGCCAGATCCGCACCAAGGTCATGGATGT
GCACGATGGCAAGGTGGTCTCCACCCACGAGCAGGTCCTGCGCACCAAGAACTAA

Translation (484 aa):
MATCSRQFTSSSSMKGSCGIGGGSSRMSSILAGGSCRAPSTYGGMSVTSSRFSSGGACGIGGGYGGSFSS
SSFGGGLGSGFGGRFDGFGGGFGGGLGGGFGGGLGGGLGGGIGDGLLVGSEKVTMQNLNDRLATYLDKVR
ALEEANTELEVKIRDWYQRQRPTEIKDYSPYFKTIEDLKSKILAATVDNANVLLQIDNARLAADDFRTKF
ETEQSLRMSVEADINGLRRVLDELTLARADLEMQIESLKEELAYLKKNHEEEMASMRGQVGGDVNVEMDA
APGVDLSRILNEMRDQYEKMAEKNRKDAEEWFFSKTEELNREVATNSELVQSGKSEISELRRTMQNLEIE
LQSQLSMKASLENNLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIAT
YRRLLEGEDAHLSSSQFSSSSQFSSGSQSSRDVTSTNRQIRTKVMDVHDGKVVSTHEQVLRTKN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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