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Report for CCDS22521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22521.1 Public Mus musculus 8 Fto 23 108 98 CCDS HistoryNCBI Gene:26383Re-query CCDS DB by CCDS ID:22521.1Re-query CCDS DB by GeneID:26383See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069718.14 ENSMUSP00000068380.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069718.14Link to Ensembl Protein Viewer:ENSMUSP00000068380.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069718Re-query CCDS DB by Protein ID:ENSMUSP00000068380
Original member Current member NCBI NM_011936.2 NP_036066.2 Accepted alive Link to Nucleotide Sequence:NM_011936.2Link to Protein Sequence:NP_036066.2Re-query CCDS DB by Nucleotide ID:NM_011936Re-query CCDS DB by Protein ID:NP_036066Link to BLAST:NP_036066.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036066.2 502 Q8BGW1-1 502 100% 0 0

Chromosomal Locations for CCDS 22521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 91313576 91313620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91401807 91401884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91409223 91409841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91441663 91441806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91468317 91468396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91474309 91474452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91485159 91485278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91522772 91522896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91666282 91666435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGAAGCGCGTCCAGACCGCGGAGGAACGAGAGCGGGAAGCTAAGAAACTGAGGCTCCTTGAGGAGCTTG
AAGACACTTGGCTTCCTTACCTGACCCCCAAAGATGATGAGTTCTATCAGCAGTGGCAGCTGAAATACCC
TAAACTGGTTTTCCGAGAGGCCGGCAGCATACCAGAGGAGCTGCATAAGGAGGTCCCCGAGGCCTTTCTC
ACACTGCATAAGCATGGCTGCTTGTTTCGGGACGTGGTGAGGATCCAAGGCAAAGATGTGCTCACCCCAG
TGTCTCGCATCCTCATCGGGGACCCAGGCTGCACCTACAAGTACTTGAACACCAGACTCTTCACGGTGCC
CTGGCCCGTGAAGGGCTGCACGGTCAAGTACACAGAGGCTGAGATCGCCGCTGCATGTCAGACCTTCCTA
AAGCTCAATGACTACCTCCAGGTGGAGACCATCCAGGCCTTGGAAGAACTGGCTGTCAGAGAGAAGGCCA
ATGAAGACGCTGTGCCACTGTGCATGGCAGAGTTCCCCAGGGCCGGCGTGGGGCCGTCCTGCGATGATGA
AGTGGACCTTAAGAGCAGAGCAGCCTACAACGTGACTTTGCTAAACTTCATGGATCCTCAGAAGATGCCC
TACTTGAAAGAGGAGCCCTATTTCGGCATGGGGAAGATGGCGGTGAGCTGGCATCACGATGAGAACCTGG
TGGACAGGTCAGCCGTGGCAGTGTACAGCTATAGCTGCGAAGGCTCTGAGGATGAAAGTGAGGACGAGTC
CAGCTTCGAAGGCAGAGATCCTGATACTTGGCATGTTGGTTTTAAGATCTCTTGGGACATCGAGACACCA
GGATTAACAATCCCTCTTCACCAGGGAGACTGCTATTTCATGCTGGATGACCTCAATGCCACCCACCAGC
ACTGTGTTTTGGCTGGCTCACAGCCTCGGTTTAGTTCCACTCACCGTGTGGCAGAGTGCTCAACAGGCAC
CTTGGATTATATCTTAGAACGCTGTCAGTTGGCGCTGCAGAATGTCCTCAATGACTCAGACGATGGCGAC
GTCTCGTTGAAATCCTTTGATCCTGCAGTTTTGAAACAAGGAGAGGAAATCCATAATGAGGTGGAGTTTG
AGTGGCTGAGGCAGTTCTGGTTTCAAGGCAATCGATACAAACTTTGCACCGATTGGTGGTGTGAGCCCAT
GACTCACCTGGAGGGGCTGTGGAAGAAGATGGAGAGCATGACAAATGCGGTGCTCCGTGAAGTTAAAAGA
GAGGGGCTCCCGGTGGAACAAAGGAGTGAGATTCTGTCTGCCATCCTGGTCCCGCTCACCGTGCGCCAGA
ACCTGAGGAAGGAGTGGCATGCCAGGTGCCAGTCCCGAGTCGTCCGGACTTTACCAGTACAGCAGAAACC
AGACTGCCGGCCATATTGGGAGAAGGATGACCCTTCCATGCCTCTGCCCTTTGACCTCACAGACGTGGTT
TCCGAGCTCAGAGGCCAGCTGCTGGAAGCAAGATCCTAG

Translation (502 aa):
MKRVQTAEEREREAKKLRLLEELEDTWLPYLTPKDDEFYQQWQLKYPKLVFREAGSIPEELHKEVPEAFL
TLHKHGCLFRDVVRIQGKDVLTPVSRILIGDPGCTYKYLNTRLFTVPWPVKGCTVKYTEAEIAAACQTFL
KLNDYLQVETIQALEELAVREKANEDAVPLCMAEFPRAGVGPSCDDEVDLKSRAAYNVTLLNFMDPQKMP
YLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGSEDESEDESSFEGRDPDTWHVGFKISWDIETP
GLTIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILERCQLALQNVLNDSDDGD
VSLKSFDPAVLKQGEEIHNEVEFEWLRQFWFQGNRYKLCTDWWCEPMTHLEGLWKKMESMTNAVLREVKR
EGLPVEQRSEILSAILVPLTVRQNLRKEWHARCQSRVVRTLPVQQKPDCRPYWEKDDPSMPLPFDLTDVV
SELRGQLLEARS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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