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Report for CCDS27859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27859.1 Public Mus musculus 15 Krt6b 23 108 98 CCDS HistoryNCBI Gene:16688Re-query CCDS DB by CCDS ID:27859.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023786.6 ENSMUSP00000023786.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023786.6Link to Ensembl Protein Viewer:ENSMUSP00000023786.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023786Re-query CCDS DB by Protein ID:ENSMUSP00000023786
Original member Current member NCBI NM_010669.3 NP_034799.2 Accepted alive Link to Nucleotide Sequence:NM_010669.3Link to Protein Sequence:NP_034799.2Re-query CCDS DB by Nucleotide ID:NM_010669Re-query CCDS DB by Protein ID:NP_034799Link to BLAST:NP_034799.2

Chromosomal Locations for CCDS 27859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101676529 101676767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101676864 101676898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101677106 101677326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101677467 101677592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101678009 101678173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101678300 101678395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101678553 101678613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101678936 101679150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101679717 101680223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGTCTACCAAAACCACCATCAAGAGTCAAACTAGCCACCGTGGCTACAGTGCCAGCTCAGCCAGAGTGC
CTGGGCTCAACCGCTCTGGCTTCAGCAGTGTGTCCGTGTGCCGCTCCCGGGGCAGCGGTGGCTCCAGTGC
AATGTGTGGAGGAGCTGGCTTTGGCAGCAGGAGCCTCTATGGTGTGGGGAGCTCCAAGAGGATCTCCATC
GGAGGGGGCAGCTGTGGCATTGGAGGAGGCTATGGCAGCCGATTTGGAGGAAGCTTCGGCATTGGAGGTG
GAGCTGGTAGTGGCTTTGGCTTCGGTGGTGGAGTTGGCTTTGGTGGTGGCTATGGCGGAGCTGGCTTCCC
GGTGTGCCCCCCTGGAGGCATCCAAGAGGTCACCATCAACCAGAACCTCCTCACCCCTCTGAACGTGCAA
ATCGACCCCACCATCCAGCGGGTCAGGACTGAGGAGAGGGAGCAGATCAAGACCCTCAACAACAAGTTTG
CCTCCTTCATCGACAAGGTCCGGTTCCTGGAGCAGCAGAACAAGGTCCTGGACACCAAGTGGGCCCTGCT
GCAAGAGCAGGGCACCAAGACCGTGAGGCAGAACCTGGAGCCTATGTTTGAGCAGTACATCAGCAACCTC
CGCAGACAGCTGGACAGCATCATTGGAGAGAGGGGTCGCCTGGACTCAGAGCTGAGGAACATGCAGGACA
CAGTGGAGGACTACAAGAGCAAATATGAAGATGAAATCAACAAGCGTACAAAAGCAGAGAATGAATTTGT
AACCGTGAAAAAGGATGTAGATGCTGCCTACATGACCAAGGTTGAACTGCAAGCCAAGGCAGATAGTCTT
GCAGACGAGATCAACTTCCTGAGAGTTATTTATGAGGCAGAACTGTCTCAGATGCAAACTCACATCTCAG
ACACATCTGTGGTCCTCTCCATGGACAACAACCGTAGCCTGGACCTGGACAGCATCATCGCTGAGGTCAA
GGCCCAGTATGAGGACATTGCTCAGAGAAGTCGGGCTGAAGCTGAGTCCTGGTACCAGACTAAATATGAG
GAGCTGCAGGTCACAGCTGGCAGACATGGGGACGACCTGCGCAACACCAAGCAGGAGATTGCTGAGATCA
ACCGCATGATCCAGAGGCTGAGATCTGAGATCGACCACGTTAAGAAGCAGTGTGCCAACCTGCAAGCTGC
TATTGCTGATGCTGAGCAACGTGGGGAGATGGCCCTGAAGGATGCCAGGGGCAAGCTGGAAGGGCTGGAG
GATGCCCTGCAGAAGGCCAAACAGGAAATGGCCAGGCTGCTGAAGGAGTACCAGGAACTCATGAATGTCA
AGCTGGCCCTGGATGTGGAAATTGCCACCTACAGGAAGCTGCTGGAAGGAGAGGAGTGCAGGTTGAATGG
TGAAGGTGTTGGACCAGTCAACATCTCTGTGGTGCAGTCCACCGTGTCCAGCGGCTATGGCAGTGCCGGG
GGTGCCAGCAGCAGCTTAGGCCTGGGTGGAAGCAGCAGCTACTCCTATGGCAGCAGCCATGGCCTTGGAG
GTGGCTTCAGTGCTGGCAGTGGCAGAGCCATCGGAGGTGGCCTCAGCTCTTCTGGTGGCCTCAGCTCTTC
CACCATCAAATACACCACCAGCGCCTCCTCCAGCAGGAAGAGCTACAGGCACTGA

Translation (554 aa):
MSTKTTIKSQTSHRGYSASSARVPGLNRSGFSSVSVCRSRGSGGSSAMCGGAGFGSRSLYGVGSSKRISI
GGGSCGIGGGYGSRFGGSFGIGGGAGSGFGFGGGVGFGGGYGGAGFPVCPPGGIQEVTINQNLLTPLNVQ
IDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWALLQEQGTKTVRQNLEPMFEQYISNL
RRQLDSIIGERGRLDSELRNMQDTVEDYKSKYEDEINKRTKAENEFVTVKKDVDAAYMTKVELQAKADSL
ADEINFLRVIYEAELSQMQTHISDTSVVLSMDNNRSLDLDSIIAEVKAQYEDIAQRSRAEAESWYQTKYE
ELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDARGKLEGLE
DALQKAKQEMARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGPVNISVVQSTVSSGYGSAG
GASSSLGLGGSSSYSYGSSHGLGGGFSAGSGRAIGGGLSSSGGLSSSTIKYTTSASSSRKSYRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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