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Report for CCDS20348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20348.1 Public Mus musculus 6 Vmn1r46 23 108 98 CCDS HistoryNCBI Gene:113856Re-query CCDS DB by CCDS ID:20348.1Re-query CCDS DB by GeneID:113856See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075797.1 ENSMUSP00000075197.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075797.1Link to Ensembl Protein Viewer:ENSMUSP00000075197.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000075797Re-query CCDS DB by Protein ID:ENSMUSP00000075197
Original member Current member EBI ENSMUST00000205088.2 ENSMUSP00000144888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205088.2Link to Ensembl Protein Viewer:ENSMUSP00000144888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205088Re-query CCDS DB by Protein ID:ENSMUSP00000144888
Original member Current member EBI ENSMUST00000226715.1 ENSMUSP00000154054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226715.1Link to Ensembl Protein Viewer:ENSMUSP00000154054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226715Re-query CCDS DB by Protein ID:ENSMUSP00000154054
Original member Current member EBI ENSMUST00000228401.1 ENSMUSP00000154175.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228401.1Link to Ensembl Protein Viewer:ENSMUSP00000154175.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228401Re-query CCDS DB by Protein ID:ENSMUSP00000154175
Original member Current member NCBI NM_053229.1 NP_444459.1 Accepted alive Link to Nucleotide Sequence:NM_053229.1Link to Protein Sequence:NP_444459.1Re-query CCDS DB by Nucleotide ID:NM_053229Re-query CCDS DB by Protein ID:NP_444459Link to BLAST:NP_444459.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444459.1 309 Q9EQ45 309 100% 0 0

Chromosomal Locations for CCDS 20348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89976171 89977100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAATAAAGCCAACATATTCTGCACCGACACAAACATGAAAGTCATATTGTTCTCTGAAGTGAGTGTTG
GGATCTCAGCTAACAGTATCCTTTTTATTTCCCACCTCTGCATGTTCCTTGGTGAAAGCAGGCCTAAGCC
CATTGATCTCTACATTGCTTTCTTCTCCCTAACCCACCTAATGCTGCTTGTAACTATGGGACTCATAGCT
GTGGATATGTTTATGCCTGGGGGGAGATGGGATTCTACCACATGCACATTTCTTATGTATTTGCACATTG
TTTTGAGGGGCCCCACACTTTGTGCTACCTGCCTGCTGAATGTCCTTTGGACCATCACCCTTAGTCCAAG
AAACTCCTGTTTAACAAAGTTTAAACATAAATCTCCCCATCACATCTCAGGTGCCTTTCTTTTCCTCTGT
GTTCTCTATATGTCTCTTAGCAGTGAACTCTTATCGATTACTGCTTCTCTGAATTTGACTTCAGAGAATT
TTCTGTATGTTTCTCAGTCCTGCTCAATTTTACCCATGAGTTACTCCATAAAAAGCATGTTTTCCACGAA
GATGGCCATCAGGGAAGCCTTTCTCATTGGTCTCATGGTCCTGTCCAGTGGGTACATGGTAGCTCTCCTA
TGGAGTCACAAGAAGCAGGCCCAGCACCTTCACAGCAACAGCCTTTCTTTAAAAGCATCCCCAGAGCAAA
GGGCCACCAGGACCATCATGCTGCTCATGAGCTTCTTTGTGGTTTTCTACATTTTAGACTCTGTTATCTT
CTACTCAAGGATGAAGTTCAAGGATGACTCAATATTTGTCTGTGTCCAAATTATTGTGTCCCATAGCTAT
GTCACAGTCAGCCCTTTTGTATTTATTTGCACTGAAAAGCATATAATTAAGTTTTTCTGGTCATTGTGTG
GCAGAATAGTAAATATTTGA

Translation (309 aa):
MNKANIFCTDTNMKVILFSEVSVGISANSILFISHLCMFLGESRPKPIDLYIAFFSLTHLMLLVTMGLIA
VDMFMPGGRWDSTTCTFLMYLHIVLRGPTLCATCLLNVLWTITLSPRNSCLTKFKHKSPHHISGAFLFLC
VLYMSLSSELLSITASLNLTSENFLYVSQSCSILPMSYSIKSMFSTKMAIREAFLIGLMVLSSGYMVALL
WSHKKQAQHLHSNSLSLKASPEQRATRTIMLLMSFFVVFYILDSVIFYSRMKFKDDSIFVCVQIIVSHSY
VTVSPFVFICTEKHIIKFFWSLCGRIVNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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