NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20194.1 Public Mus musculus 6 Vmn1r29 23 108 98 CCDS HistoryNCBI Gene:113859Re-query CCDS DB by CCDS ID:20194.1Re-query CCDS DB by GeneID:113859See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168416.1 ENSMUSP00000129069.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168416.1Link to Ensembl Protein Viewer:ENSMUSP00000129069.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168416Re-query CCDS DB by Protein ID:ENSMUSP00000129069
Original member Current member EBI ENSMUST00000227761.1 ENSMUSP00000153943.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227761.1Link to Ensembl Protein Viewer:ENSMUSP00000153943.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227761Re-query CCDS DB by Protein ID:ENSMUSP00000153943
Original member Current member EBI ENSMUST00000228909.1 ENSMUSP00000154278.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228909.1Link to Ensembl Protein Viewer:ENSMUSP00000154278.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228909Re-query CCDS DB by Protein ID:ENSMUSP00000154278
Original member Current member EBI ENSMUST00000228038.1 ENSMUSP00000154376.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228038.1Link to Ensembl Protein Viewer:ENSMUSP00000154376.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228038Re-query CCDS DB by Protein ID:ENSMUSP00000154376
Original member Current member EBI ENSMUST00000226971.1 ENSMUSP00000154612.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226971.1Link to Ensembl Protein Viewer:ENSMUSP00000154612.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226971Re-query CCDS DB by Protein ID:ENSMUSP00000154612
Original member Current member NCBI NM_053232.1 NP_444462.1 Accepted alive Link to Nucleotide Sequence:NM_053232.1Link to Protein Sequence:NP_444462.1Re-query CCDS DB by Nucleotide ID:NM_053232Re-query CCDS DB by Protein ID:NP_444462Link to BLAST:NP_444462.1

Chromosomal Locations for CCDS 20194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 58307297 58308208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTCCTTATTCAAGAATGTTCTTTATTTCCAAGCTGGACTTGGAGTTTTAGCCAATATGTTTCTACTTT
TTTTCTATATTTTCATAATCCTAGGTCACAGACCTAAACCCACAGACCTGATCTCCTGTCAACTGACCTT
CGTTCACATAATGATGTTCCTTGCTGGAGGGGATATTTGGCTTACAGACATATTTGAGACACTGAACATT
GAGAATGACTTCAAATGTAAGACAATATTTTACATAAGCAGGGTGATGAGAGGCCTCTCTATCTGCAACA
CCTGCCTCCTGAGTGTGGTCCAGGCTGTCACAATCAGTCCCAGTACCTCACTGTTGGCAAAATTCAAACC
AAGACTGAAAATGTACTTGATCTATGCTTTCTTCTGTATTTGGTCTTTCAATTTGCTCTACAGTAGTAAC
CAGATCTTATATGTTGGTGGTTTTACCAACTTAAGTGAAACCAACCAGATGAAGGTCACTAAATCCTGTA
CACTCTTACCAAAGAACTACATCATCAAAGGATTGATTTTAACAGTGTCAATCTCCAGAGATGTTTTTCT
TGTAGGAGTCATGCTGACTACAAGCACATACATGTTGAATATTTTGTTCAGGCATCAGAGGCAATGCAAG
CATCTTCATAGCATCAGCTATCTGAGAGCATCCCCTGAGAAAAGGGCCACCCAGACCATCTTACTGCTTG
TGGTCTTCTTTGTGGTCATGTACTGGGTGGACTTTATCATCTCATCCACCTCAGTCATGTTATGGATGTA
TGACCCAGTAGTCCTGACTGTTCAGAAGTTTGTGATGTGTGCCTATCCCACAATTACTCCTTTGGTACAA
ATCACTTCTGATAATAGAATAATAATTATGTTGGAAAACATGCAGTCAAAGCACCGCCAGAATTTTTTTT
AA

Translation (303 aa):
MSLFKNVLYFQAGLGVLANMFLLFFYIFIILGHRPKPTDLISCQLTFVHIMMFLAGGDIWLTDIFETLNI
ENDFKCKTIFYISRVMRGLSICNTCLLSVVQAVTISPSTSLLAKFKPRLKMYLIYAFFCIWSFNLLYSSN
QILYVGGFTNLSETNQMKVTKSCTLLPKNYIIKGLILTVSISRDVFLVGVMLTTSTYMLNILFRHQRQCK
HLHSISYLRASPEKRATQTILLLVVFFVVMYWVDFIISSTSVMLWMYDPVVLTVQKFVMCAYPTITPLVQ
ITSDNRIIIMLENMQSKHRQNFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH