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Report for CCDS50193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50193.1 Public Mus musculus 17 Eml4 23 108 98 CCDS HistoryNCBI Gene:78798Re-query CCDS DB by CCDS ID:50193.1Re-query CCDS DB by GeneID:78798See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112363.9 ENSMUSP00000107982.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112363.9Link to Ensembl Protein Viewer:ENSMUSP00000107982.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112363Re-query CCDS DB by Protein ID:ENSMUSP00000107982
Original member Current member NCBI NM_001114362.1 NP_001107834.1 Accepted alive Link to Nucleotide Sequence:NM_001114362.1Link to Protein Sequence:NP_001107834.1Re-query CCDS DB by Nucleotide ID:NM_001114362Re-query CCDS DB by Protein ID:NP_001107834Link to BLAST:NP_001107834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107834.1 919 Q3UMY5-2 919 99.8912% 0 1

Chromosomal Locations for CCDS 50193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 83351215 83351239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83410026 83410208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83421606 83421735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83427223 83427351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83428000 83428025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83440031 83440154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83441296 83441445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83444629 83444698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83445946 83446056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83448160 83448255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83450646 83450780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83450939 83451074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83454401 83454552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456032 83456157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456242 83456373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456995 83457062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83461529 83461617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83463498 83463595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83473046 83473133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83473650 83473748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83477204 83477334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83477706 83478167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGGACGGTTTCGCCGGCAGCCTCGATGATAGTATTTCTGCTGCAAGTACCTCTGACGTTCAAGACCGCC
TCTCAGCTCTTGAGTCACGAGTTCAACAACAAGAAGATGAAATCACTGTGCTAAAGGCAGCATTGGCTGA
TGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATGTAGCCTCAGTGAAAAAGTCCATGCCAAGTAAAGGC
CAACCAAGCCTTCGAGAAGCTATTTCTATGTCCTGTATAACCAATGGAAGTGGTATAAGCAGAAAACAGA
ATCATACCAGCTCTGTATCAATAGCAAGAAAAGAAACTCTTTCTTCAGCTGCTAAAAGCATAAAACGTCC
ACCAACAGCTGAAAAGTCACATAACTCATGGGAAAATTCAGATGATAGTCGTAATAAATTAATGAAAACG
GTTTCAACATCAAAACTAATATCAAAGGTTATAAAAAATGCAGACAAACATAAAGATGTCATCGTCAATC
AAGAAGGAGAATATATTAAAATGTTTATGCGAGGTCGGCCAATTACAATGTTCATTCCTTCGGATGTTGA
CAACTATGATGACATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTATACGGTTATCGA
GGAAAGGACTGTAGAGCGAATGTATACCTGCTTCCCACAGGGGAGATAGTTTATTTTATCGCCTCAGTGG
TAGTCCTGTTTAATTATGAGGAGAGGACTCAGCGACACTACCTGGGTCATACAGACTGTGTGAGATGCCT
TGCTGTACATCCTGACAAGATTAGAATTGCAACTGGACAGATAGCCGGAGTAGACAAAGATGGAAGGCCT
CTGCAACCCCATGTCAGGGTGTGGGATTCAGTAAGTCTTACCACACTGCATGTTATTGGACTTGGAACTT
TTGAGCGTGGAGTAGGATGCCTGGATTTTTCAAAAGCAGATTCAGGTGTTCATTTATGCGTTATTGATGA
CTCCAATGAGCACATGCTTACTGTATGGGACTGGCAGAAAAAATCAAAAATCGCAGAAATAAAGACAACA
AACGAAGTTGTTTTGGCTGTAGAATTCCACCCAACAGATGCAAATACAATAATAACATGTGGTAAATCTC
ATATTTTTTTCTGGACCTGGAGTGGCAACTCACTAACAAGAAAACAGGGAATTTTTGGGAAATATGAAAA
ACCAAAATTCGTTCAGTGTTTGGCATTCTTGGGGAATGGAGATGTTCTCACTGGAGACTCGGGTGGAGTC
ATGCTGATCTGGAGCAAAACGATGGTAGAGCCCCCGCCCGGGAAAGGACCTAAAGGTGTGTATCAGATCA
ACAGACAAATCAAAGCTCATGATGGCAGTGTGTTTACACTTTGTCAGATGAGAAATGGGATGCTATTAAC
TGGAGGCGGAAAAGACAGAAAAATAATTTTGTGGGATCATGATCTGAACCTTGAAAGAGAAATAGAGGTT
CCTGATCAGTATGGCACCATTAGAGCAGTTGCAGAGGGAAGGGCAGAACAGTTCTTAGTAGGCACATCAC
GAAACTTTATTTTACGGGGAACGTTTAATGATGGCTTCCAAATAGAAGTCCAGGGTCATACAGATGAACT
CTGGGGCCTTGCAACACATCCCTTCAAAGATTTGCTCTTGACGTGTGCTCAGGACAGGCAGGTGTGCATG
TGGAACTCAGTGGAGCACAGGCTGGAGTGGACCAGGCTTGTGGACGAACCAGGACACTGTGCAGACTTTC
ATCCAAGCGGTACAGTGGTAGCCATTGGAACGCACTCAGGCAGGTGGTTTGTTCTGGATGCAGAAACAAG
AGATCTGGTGTCAATCCACACGGATGGCAATGAGCAGCTGTCTGTGATGCGCTACTCAGTAGATGGCACT
CTTCTGGCTGTGGGCTCTCATGACAACTTTATTTACCTCTACACAGTCTTAGAAAACGGAAGAAAATACA
GCAGATATGGAAAGTGCACTGGACATTCTAGCTACATCACACACCTTGACTGGTCCCCAGACAATAAGCA
TATAATGTCTAACTCGGGTGACTACGAGATACTGTACTGGGACATTGAAAATGGCTGCAAACTAATCAGG
AACCGATCAGATTGCAAGGACATCGATTGGACAACATATACCTGTGTGCTAGGCTTCCAAGTCTTTGGGG
TGTGGCCGGAAGGGTCCGATGGAACAGACATCAACGCACTGGTTCGATCCCACAACAGAAGAGTGATCGC
AGTGGCCGATGATTTCTGCAAAGTTCATCTCTTTCAGTACCCCTGCTCCAAAGCCAAGGCTCCCAGTCAC
AAGTACAGTGCCCACAGCAGCCATGTGACCAACGTCAGTTTTACTCATAATGACAGTCACCTAATTTCAA
CTGGTGGGAAGGATATGAGCATCATTCAGTGGAAGCTTGTGGAAAAGTTACCTGTGCCTCAAAACGAGGT
CATAACAGACGCCAGTGTGACCAAAACCCCTGCCTCTTCCTCTGAAACTGCCAGGCCGTCTAACTCTCCT
CCACTGCCTCCTTCTCTACCGTTAACTGGGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCCCCACAC
TAGTGGAGAACAGCCTGGAGCAGATCGCAGAGCCCAGCGAGGAGCAGAGCGAGTGGGGTAGCGAAGACCT
TGGTGTGGTGATTGATGAAGAGCCTGCTAGTGAGTTAAGTGAGACACAGGGAGCAACTGAGCTGCCTGAG
GAGGAGCGAGGCATAACACCCCTGTGCTAA

Translation (919 aa):
MDGFAGSLDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHVASVKKSMPSKG
QPSLREAISMSCITNGSGISRKQNHTSSVSIARKETLSSAAKSIKRPPTAEKSHNSWENSDDSRNKLMKT
VSTSKLISKVIKNADKHKDVIVNQEGEYIKMFMRGRPITMFIPSDVDNYDDIRTELPPEKLKLEWVYGYR
GKDCRANVYLLPTGEIVYFIASVVVLFNYEERTQRHYLGHTDCVRCLAVHPDKIRIATGQIAGVDKDGRP
LQPHVRVWDSVSLTTLHVIGLGTFERGVGCLDFSKADSGVHLCVIDDSNEHMLTVWDWQKKSKIAEIKTT
NEVVLAVEFHPTDANTIITCGKSHIFFWTWSGNSLTRKQGIFGKYEKPKFVQCLAFLGNGDVLTGDSGGV
MLIWSKTMVEPPPGKGPKGVYQINRQIKAHDGSVFTLCQMRNGMLLTGGGKDRKIILWDHDLNLEREIEV
PDQYGTIRAVAEGRAEQFLVGTSRNFILRGTFNDGFQIEVQGHTDELWGLATHPFKDLLLTCAQDRQVCM
WNSVEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHSGRWFVLDAETRDLVSIHTDGNEQLSVMRYSVDGT
LLAVGSHDNFIYLYTVLENGRKYSRYGKCTGHSSYITHLDWSPDNKHIMSNSGDYEILYWDIENGCKLIR
NRSDCKDIDWTTYTCVLGFQVFGVWPEGSDGTDINALVRSHNRRVIAVADDFCKVHLFQYPCSKAKAPSH
KYSAHSSHVTNVSFTHNDSHLISTGGKDMSIIQWKLVEKLPVPQNEVITDASVTKTPASSSETARPSNSP
PLPPSLPLTGTAEEESRMGSSPTLVENSLEQIAEPSEEQSEWGSEDLGVVIDEEPASELSETQGATELPE
EERGITPLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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