NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42569.1 Public Homo sapiens 19 SPTBN4 24 110 108 CCDS HistoryNCBI Gene:57731Re-query CCDS DB by CCDS ID:42569.1Re-query CCDS DB by GeneID:57731See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392023.1 ENSP00000375877.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392023.1Link to Ensembl Protein Viewer:ENSP00000375877.1Re-query CCDS DB by Nucleotide ID:ENST00000392023Re-query CCDS DB by Protein ID:ENSP00000375877
Original member Current member NCBI NM_025213.3 NP_079489.2 Accepted alive Link to Nucleotide Sequence:NM_025213.3Link to Protein Sequence:NP_079489.2Re-query CCDS DB by Nucleotide ID:NM_025213Re-query CCDS DB by Protein ID:NP_079489Link to BLAST:NP_079489.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079489.2 678 Q9H254-5 678 100% 0 0

Chromosomal Locations for CCDS 42569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40532649 40532771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40534080 40534343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40549189 40549413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40550238 40550327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40554147 40554425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40554516 40554646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40556084 40556288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40557023 40557403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40560159 40560497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGCTGATGGCGCGGGATGGCACGCGGGAGGACAACCACAAGCTGCATAAGAGATGGCTCCGGCACCAGG
CATTCATGGCCGAGCTGGCTCAGAATAAGGAGTGGCTGGAGAAGATCGAGCGGGAGGGCCAGCAACTGAT
GCAGGAGAAGCCCGAACTGGCGGCCTCCGTGCGGAAGAAGCTGGGCGAGATCCGCCAGTGCTGGGCGGAG
CTGGAGAGCACCACCCAGGCCAAGGCACGGCAGCTCTTTGAGGCCAGCAAAGCAGACCAGCTGGTGCAGA
GCTTTGCTGAGCTGGACAAGAAGCTCCTTCACATGGAGAGCCAGCTGCAAGACGTGGACCCTGGAGGAGA
CCTGGCCACTGTCAACAGTCAGCTCAAGAAGCTGCAGTCCATGGAGTCGCAGGTGGAGGAGTGGTACCGC
GAGGTGGGAGAGCTGCAGGCGCAGACGGCGGCGCTGCCGCTGGAGCCGGCGAGCAAGGAGCTGGTGGGTG
AGCGGCAGAACGCGGTGGGCGAGCGCCTGGTGCGCCTGCTCGAGCCGTTGCAGGAGCGCCGCCGCTTGCT
GCTGGCTTCCAAGGAGTTGCACCAGGTGGCGCACGACCTGGACGACGAGCTGGCATGGGTTCAGGAGCGG
CTGCCACTGGCCATGCAGACAGAGCGAGGCAACGGTTTGCAGGCGGTCCAGCAGCACATCAAAAAGAACC
AGGGCCTGCGGCGGGAGATCCAGGCGCATGGGCCGCGCCTGGAGGAGGTGCTGGAGCGCGCGGGCGCGCT
GGCGTCGCTGCGCAGCCCGGAGGCAGAGGCAGTGCGCCGGGGCCTGGAGCAGCTGCAGAGCGCCTGGGCC
GGACTGCGGGAGGCTGCCGAGCGACGGCAGCAGGTGCTGGACGCCGCCTTCCAGGTGGAGCAGTACTACT
TCGACGTGGCTGAGGTGGAGGCGTGGCTGGGCGAGCAGGAGCTGCTCATGATGAGTGAGGACAAGGGCAA
GGACGAACAGAGCACCCTGCAGCTGCTCAAGAAACACCTGCAGCTGGAGCAAGGCGTGGAGAACTACGAG
GAAAGCATCGCGCAGCTGTCGCGCCAGTGCCGGGCGCTGCTGGAGATGGGGCACCCGGACAGCGAGCAGA
TCAGCCGGCGGCAGTCTCAGGTGGACCGCCTGTACGTGGCGCTCAAGGAGCTGGGTGAGGAGCGCCGGGT
GGCTCTGGAACAGCAGTACTGGCTGTACCAGCTCAGCCGCCAGGTGAGCGAGCTTGAGCACTGGATTGCC
GAGAAGGAGGTGGTGGCTGGCTCACCCGAGCTCGGCCAGGACTTTGAGCATGTCTCGGTGCTGCAGGAGA
AATTCTCAGAGTTTGCCAGCGAGACAGGTATGGCAGGGCGGGAACGGCTGGCAGCTGTGAACCAGATGGT
GGATGAGCTGATCGAGTGTGGCCATACAGCAGCGGCCACCATGGCCGAGTGGAAGGACGGACTGAACGAG
GCCTGGGCTGAGCTGCTGGAGCTCATGGGCACACGGGCCCAGCTGCTGGCCGCCTCTCGGGAGCTTCATA
AGTTCTTCAGTGACGCCCGAGAGCTTCAGGGACAGATTGAGGAGAAGCGGAGGCGGCTGCCCCGCCTGAC
CACCCCGCCTGAGCCGAGACCCAGTGCCAGTTCCATGCAGCGGACCCTGAGAGCCTTTGAGCATGACCTG
CAGCTCCTCGTGTCCCAGGTACGGCAGCTGCAGGAGGGGGCGGCCCAGCTGCGGACGGTGTATGCGGGTG
AACATGCCGAGGCCATCGCTAGCCGGGAGCAGGAGGTGCTGCAGGGTTGGAAAGAGCTGCTGTCAGCCTG
TGAGGATGCCCGCCTGCATGTCAGCTCCACAGCCGACGCCCTGCGCTTCCACAGCCAAGTCCGCGACCTG
CTCTCCTGGATGGATGGCATCGCCAGCCAGATTGGGGCAGCCGACAAGCCCAGGTGCCCCTCATCCCTCC
TCGGGCTTCCTGCCTCCCCCTGGTGGCCTACCCCAGCCACCCCCAGCCCATTGACAGCCCCCTTCTCAAT
GGAATGA

Translation (678 aa):
MLMARDGTREDNHKLHKRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAE
LESTTQAKARQLFEASKADQLVQSFAELDKKLLHMESQLQDVDPGGDLATVNSQLKKLQSMESQVEEWYR
EVGELQAQTAALPLEPASKELVGERQNAVGERLVRLLEPLQERRRLLLASKELHQVAHDLDDELAWVQER
LPLAMQTERGNGLQAVQQHIKKNQGLRREIQAHGPRLEEVLERAGALASLRSPEAEAVRRGLEQLQSAWA
GLREAAERRQQVLDAAFQVEQYYFDVAEVEAWLGEQELLMMSEDKGKDEQSTLQLLKKHLQLEQGVENYE
ESIAQLSRQCRALLEMGHPDSEQISRRQSQVDRLYVALKELGEERRVALEQQYWLYQLSRQVSELEHWIA
EKEVVAGSPELGQDFEHVSVLQEKFSEFASETGMAGRERLAAVNQMVDELIECGHTAAATMAEWKDGLNE
AWAELLELMGTRAQLLAASRELHKFFSDARELQGQIEEKRRRLPRLTTPPEPRPSASSMQRTLRAFEHDL
QLLVSQVRQLQEGAAQLRTVYAGEHAEAIASREQEVLQGWKELLSACEDARLHVSSTADALRFHSQVRDL
LSWMDGIASQIGAADKPRCPSSLLGLPASPWWPTPATPSPLTAPFSME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH