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Report for CCDS33700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33700.1 Public Homo sapiens 3 GHRL 24 110 108 CCDS HistoryNCBI Gene:51738Re-query CCDS DB by CCDS ID:33700.1Re-query CCDS DB by GeneID:51738See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335542.13 ENSP00000335074.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335542.13Link to Ensembl Protein Viewer:ENSP00000335074.8Re-query CCDS DB by Nucleotide ID:ENST00000335542Re-query CCDS DB by Protein ID:ENSP00000335074
Original member Current member EBI ENST00000457360.5 ENSP00000391406.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457360.5Link to Ensembl Protein Viewer:ENSP00000391406.1Re-query CCDS DB by Nucleotide ID:ENST00000457360Re-query CCDS DB by Protein ID:ENSP00000391406
Original member Current member EBI ENST00000429122.1 ENSP00000414819.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429122.1Link to Ensembl Protein Viewer:ENSP00000414819.1Re-query CCDS DB by Nucleotide ID:ENST00000429122Re-query CCDS DB by Protein ID:ENSP00000414819
Original member Current member NCBI NM_001302821.2 NP_001289750.1 Accepted alive Link to Nucleotide Sequence:NM_001302821.2Link to Protein Sequence:NP_001289750.1Re-query CCDS DB by Nucleotide ID:NM_001302821Re-query CCDS DB by Protein ID:NP_001289750Link to BLAST:NP_001289750.1
Original member Current member NCBI NM_001302822.2 NP_001289751.1 Accepted alive Link to Nucleotide Sequence:NM_001302822.2Link to Protein Sequence:NP_001289751.1Re-query CCDS DB by Nucleotide ID:NM_001302822Re-query CCDS DB by Protein ID:NP_001289751Link to BLAST:NP_001289751.1
Original member Current member NCBI NM_001302824.2 NP_001289753.1 Accepted alive Link to Nucleotide Sequence:NM_001302824.2Link to Protein Sequence:NP_001289753.1Re-query CCDS DB by Nucleotide ID:NM_001302824Re-query CCDS DB by Protein ID:NP_001289753Link to BLAST:NP_001289753.1
Original member Current member NCBI NM_001302825.2 NP_001289754.1 Accepted alive Link to Nucleotide Sequence:NM_001302825.2Link to Protein Sequence:NP_001289754.1Re-query CCDS DB by Nucleotide ID:NM_001302825Re-query CCDS DB by Protein ID:NP_001289754Link to BLAST:NP_001289754.1
Original member Current member NCBI NM_016362.5 NP_057446.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016362.5Link to Protein Sequence:NP_057446.1Re-query CCDS DB by Nucleotide ID:NM_016362Re-query CCDS DB by Protein ID:NP_057446Link to BLAST:NP_057446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289750.1 117 Q9UBU3-1 117 100% 0 0
NP_001289751.1 117 Q9UBU3-1 117 100% 0 0
NP_001289753.1 117 Q9UBU3-1 117 100% 0 0
NP_001289754.1 117 Q9UBU3-1 117 100% 0 0
NP_057446.1 117 Q9UBU3-1 117 100% 0 0

Chromosomal Locations for CCDS 33700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10285875 10285894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10286704 10286812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10289762 10289878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10290073 10290180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGCCCTCCCCAGGGACCGTCTGCAGCCTCCTGCTCCTCGGCATGCTCTGGCTGGACTTGGCCATGGCAG
GCTCCAGCTTCCTGAGCCCTGAACACCAGAGAGTCCAGCAGAGAAAGGAGTCGAAGAAGCCACCAGCCAA
GCTGCAGCCCCGAGCTCTAGCAGGCTGGCTCCGCCCGGAAGATGGAGGTCAAGCAGAAGGGGCAGAGGAT
GAACTGGAAGTCCGGTTCAACGCCCCCTTTGATGTTGGAATCAAGCTGTCAGGGGTTCAGTACCAGCAGC
ACAGCCAGGCCCTGGGGAAGTTTCTTCAGGACATCCTCTGGGAAGAGGCCAAAGAGGCCCCAGCCGACAA
GTGA

Translation (117 aa):
MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQQRKESKKPPAKLQPRALAGWLRPEDGGQAEGAED
ELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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