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Report for CCDS47412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47412.1 Public Homo sapiens 6 MLN 24 110 108 CCDS HistoryNCBI Gene:4295Re-query CCDS DB by CCDS ID:47412.1Re-query CCDS DB by GeneID:4295See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47412.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266003.9 ENSP00000266003.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000266003.9Link to Ensembl Protein Viewer:ENSP00000266003.5Re-query CCDS DB by Nucleotide ID:ENST00000266003Re-query CCDS DB by Protein ID:ENSP00000266003
Original member Current member NCBI NM_001040109.2 NP_001035198.1 Accepted alive Link to Nucleotide Sequence:NM_001040109.2Link to Protein Sequence:NP_001035198.1Re-query CCDS DB by Nucleotide ID:NM_001040109Re-query CCDS DB by Protein ID:NP_001035198Link to BLAST:NP_001035198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035198.1 114 P12872-3 114 100% 0 0

Chromosomal Locations for CCDS 47412.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33794825 33794832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33795503 33795605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33799105 33799221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33801047 33801163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGGTATCCCGTAAGGCTGTGGCTGCTCTGCTGGTGGTGCATGTAGCTGCCATGCTGGCCTCCCAGACGG
AAGCCTTCGTCCCCATCTTCACCTATGGCGAACTCCAGAGGATGCAGGAAAAGGAACGGAATAAAGGGCA
AAAGAAATCCCTGAGTGTATGGCAGAGGTCTGGGGAGGAAGGTCCTGTAGACCCTGCGGAGCCCATCAGG
GAAGAAGAAAACGAAATGATCAAGCTGACTGCTCCTCTGGAAATTGGAATGAGGATGAACTCCAGACAGC
TGGAAAAGTACCCGGCCACCCTGGAAGGGCTGCTGAGTGAGATGCTTCCCCAGCATGCCAAGTGA

Translation (114 aa):
MVSRKAVAALLVVHVAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEEGPVDPAEPIR
EEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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