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Report for CCDS10462.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10462.2 Public Homo sapiens 16 MLST8 24 110 108 CCDS HistoryNCBI Gene:64223Re-query CCDS DB by CCDS ID:10462.2Re-query CCDS DB by GeneID:64223See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10462.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397124.5 ENSP00000380313.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397124.5Link to Ensembl Protein Viewer:ENSP00000380313.1Re-query CCDS DB by Nucleotide ID:ENST00000397124Re-query CCDS DB by Protein ID:ENSP00000380313
Original member Current member EBI ENST00000565250.1 ENSP00000455046.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000565250.1Link to Ensembl Protein Viewer:ENSP00000455046.1Re-query CCDS DB by Nucleotide ID:ENST00000565250Re-query CCDS DB by Protein ID:ENSP00000455046
Original member Current member EBI ENST00000569417.6 ENSP00000456405.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000569417.6Link to Ensembl Protein Viewer:ENSP00000456405.1Re-query CCDS DB by Nucleotide ID:ENST00000569417Re-query CCDS DB by Protein ID:ENSP00000456405
Original member Current member EBI ENST00000564088.5 ENSP00000457870.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564088.5Link to Ensembl Protein Viewer:ENSP00000457870.1Re-query CCDS DB by Nucleotide ID:ENST00000564088Re-query CCDS DB by Protein ID:ENSP00000457870
Original member Current member NCBI NM_001199173.3 NP_001186102.1 Accepted alive Link to Nucleotide Sequence:NM_001199173.3Link to Protein Sequence:NP_001186102.1Re-query CCDS DB by Nucleotide ID:NM_001199173Re-query CCDS DB by Protein ID:NP_001186102Link to BLAST:NP_001186102.1
Original member Current member NCBI NM_001199174.3 NP_001186103.1 Accepted alive Link to Nucleotide Sequence:NM_001199174.3Link to Protein Sequence:NP_001186103.1Re-query CCDS DB by Nucleotide ID:NM_001199174Re-query CCDS DB by Protein ID:NP_001186103Link to BLAST:NP_001186103.1
Original member Current member NCBI NM_022372.6 NP_071767.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022372.6Link to Protein Sequence:NP_071767.3Re-query CCDS DB by Nucleotide ID:NM_022372Re-query CCDS DB by Protein ID:NP_071767Link to BLAST:NP_071767.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186102.1 326 Q9BVC4-1 326 100% 0 0
NP_001186103.1 326 Q9BVC4-1 326 100% 0 0
NP_071767.3 326 Q9BVC4-1 326 100% 0 0

Chromosomal Locations for CCDS 10462.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2206086 2206214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2206358 2206409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2206497 2206659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2207035 2207110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2207193 2207345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2208210 2208334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2208450 2208613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2208759 2208877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGAACACCTCCCCAGGCACGGTGGGCAGTGACCCGGTCATCCTGGCCACTGCAGGCTACGACCACACCG
TGCGCTTCTGGCAGGCCCACAGCGGCATCTGCACCCGGACGGTGCAGCACCAGGACTCCCAGGTGAATGC
CTTGGAGGTCACACCGGACCGCAGCATGATTGCTGCTGCAGGTTACCAGCACATCCGCATGTATGATCTC
AACTCCAATAACCCTAACCCCATCATCAGCTACGACGGCGTCAACAAGAACATCGCGTCTGTGGGCTTCC
ACGAAGACGGCCGCTGGATGTACACGGGCGGCGAGGACTGCACAGCCAGGATCTGGGACCTCAGGTCCCG
GAACCTGCAGTGCCAGCGGATCTTCCAGGTGAACGCACCCATTAACTGCGTGTGCCTGCACCCCAACCAG
GCAGAGCTCATCGTGGGTGACCAGAGCGGGGCTATCCACATCTGGGACTTGAAAACAGACCACAACGAGC
AGCTGATCCCTGAGCCCGAGGTCTCCATCACGTCCGCCCACATCGATCCCGACGCCAGCTACATGGCAGC
TGTCAATAGCACCGGAAACTGCTATGTCTGGAATCTGACGGGGGGCATTGGTGACGAGGTGACCCAGCTC
ATCCCCAAGACTAAGATCCCTGCCCACACGCGCTACGCCCTGCAGTGTCGCTTCAGCCCCGACTCCACGC
TCCTCGCCACCTGCTCGGCTGATCAGACGTGCAAGATCTGGAGGACGTCCAACTTCTCCCTGATGACGGA
GCTGAGCATCAAGAGCGGCAACCCCGGGGAGTCCTCCCGCGGCTGGATGTGGGGCTGCGCCTTCTCGGGG
GACTCCCAGTACATCGTCACTGCTTCCTCGGACAACCTGGCCCGGCTCTGGTGTGTGGAGACTGGAGAGA
TCAAGAGAGAGTATGGCGGCCACCAGAAGGCTGTTGTCTGCCTGGCCTTCAATGACAGTGTGCTGGGCTA
G

Translation (326 aa):
MNTSPGTVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDL
NSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQ
AELIVGDQSGAIHIWDLKTDHNEQLIPEPEVSITSAHIDPDASYMAAVNSTGNCYVWNLTGGIGDEVTQL
IPKTKIPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRGWMWGCAFSG
DSQYIVTASSDNLARLWCVETGEIKREYGGHQKAVVCLAFNDSVLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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