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Report for CCDS131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
131.1 Public Homo sapiens 1 FBXO44 24 110 108 CCDS HistoryNCBI Gene:93611Re-query CCDS DB by CCDS ID:131.1Re-query CCDS DB by GeneID:93611See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 131.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251546.8 ENSP00000251546.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000251546.8Link to Ensembl Protein Viewer:ENSP00000251546.4Re-query CCDS DB by Nucleotide ID:ENST00000251546Re-query CCDS DB by Protein ID:ENSP00000251546
Original member Current member EBI ENST00000376760.5 ENSP00000365951.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376760.5Link to Ensembl Protein Viewer:ENSP00000365951.1Re-query CCDS DB by Nucleotide ID:ENST00000376760Re-query CCDS DB by Protein ID:ENSP00000365951
Original member Current member EBI ENST00000376762.8 ENSP00000365953.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376762.8Link to Ensembl Protein Viewer:ENSP00000365953.4Re-query CCDS DB by Nucleotide ID:ENST00000376762Re-query CCDS DB by Protein ID:ENSP00000365953
Original member Current member NCBI NM_001304790.2 NP_001291719.1 Accepted alive Link to Nucleotide Sequence:NM_001304790.2Link to Protein Sequence:NP_001291719.1Re-query CCDS DB by Nucleotide ID:NM_001304790Re-query CCDS DB by Protein ID:NP_001291719Link to BLAST:NP_001291719.1
Original member Current member NCBI NM_183412.3 NP_904319.1 Accepted alive Link to Nucleotide Sequence:NM_183412.3Link to Protein Sequence:NP_904319.1Re-query CCDS DB by Nucleotide ID:NM_183412Re-query CCDS DB by Protein ID:NP_904319Link to BLAST:NP_904319.1
Original member Current member NCBI NM_183413.3 NP_904320.1 Accepted alive Link to Nucleotide Sequence:NM_183413.3Link to Protein Sequence:NP_904320.1Re-query CCDS DB by Nucleotide ID:NM_183413Re-query CCDS DB by Protein ID:NP_904320Link to BLAST:NP_904320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291719.1 224 Q9H4M3-2 224 100% 0 0
NP_904319.1 224 Q9H4M3-2 224 100% 0 0
NP_904320.1 224 Q9H4M3-2 224 100% 0 0

Chromosomal Locations for CCDS 131.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 11655836 11656100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11658267 11658364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11658736 11658871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11661130 11661305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGCTGTGGGGAACATCAACGAGCTGCCCGAGAACATCCTGCTGGAGCTGTTCACGCACGTGCCCGCCC
GCCAGCTGCTGCTGAACTGCCGCCTGGTCTGCAGCCTCTGGCGGGACCTCATCGACCTCGTGACCCTCTG
GAAACGCAAGTGCCTGCGAGAGGGCTTCATCACTGAGGACTGGGACCAGCCCGTGGCCGACTGGAAGATC
TTCTACTTCTTACGGAGCCTGCACAGGAACCTCCTGCACAACCCGTGCGCTGAAGAGGGGTTCGAGTTCT
GGAGCCTGGATGTGAATGGAGGCGATGAGTGGAAGGTGGAGGATCTCTCTCGAGACCAGAGGAAGGAATT
CCCCAATGACCAGGTTCGCAGCCAGGCCAGATTGCGGGTCCAAGTACCAGCTGTGCGTTCAGCTCCTGTC
GTCCGCGCACGCGCCTCTGGGGACCTTCCAGCCAGACCCGGCGACCATCCAGCAGAAGAGCGATGCCAAG
TGGAGGGAGGTCTCCCACACATTCTCCAACTACCCGCCCGGCGTCCGCTACATCTGGTTTCAGCACGGCG
GCGTGGACACTCATTACTGGGCCGGCTGGTACGGCCCGAGGGTCACCAACAGCAGCATCACCATCGGGCC
CCCGCTGCCCTGACACCCCCTGAGCCCCCATCTGCTGAACCCTGA

Translation (224 aa):
MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVADWKI
FYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPNDQVRSQARLRVQVPAVRSAPV
VRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHHRA
PAALTPPEPPSAEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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