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Report for CCDS55620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55620.1 Public Homo sapiens 1 AHCYL1 24 110 108 CCDS HistoryNCBI Gene:10768Re-query CCDS DB by CCDS ID:55620.1Re-query CCDS DB by GeneID:10768See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359172.3 ENSP00000352092.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359172.3Link to Ensembl Protein Viewer:ENSP00000352092.3Re-query CCDS DB by Nucleotide ID:ENST00000359172Re-query CCDS DB by Protein ID:ENSP00000352092
Original member Current member EBI ENST00000393614.8 ENSP00000377238.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393614.8Link to Ensembl Protein Viewer:ENSP00000377238.4Re-query CCDS DB by Nucleotide ID:ENST00000393614Re-query CCDS DB by Protein ID:ENSP00000377238
Original member Current member NCBI NM_001242673.2 NP_001229602.1 Accepted alive Link to Nucleotide Sequence:NM_001242673.2Link to Protein Sequence:NP_001229602.1Re-query CCDS DB by Nucleotide ID:NM_001242673Re-query CCDS DB by Protein ID:NP_001229602Link to BLAST:NP_001229602.1
Original member Current member NCBI NM_001242674.2 NP_001229603.1 Accepted alive Link to Nucleotide Sequence:NM_001242674.2Link to Protein Sequence:NP_001229603.1Re-query CCDS DB by Nucleotide ID:NM_001242674Re-query CCDS DB by Protein ID:NP_001229603Link to BLAST:NP_001229603.1
Original member Current member NCBI NM_001242675.2 NP_001229604.1 Accepted alive Link to Nucleotide Sequence:NM_001242675.2Link to Protein Sequence:NP_001229604.1Re-query CCDS DB by Nucleotide ID:NM_001242675Re-query CCDS DB by Protein ID:NP_001229604Link to BLAST:NP_001229604.1
Original member Current member NCBI NM_001242676.2 NP_001229605.1 Accepted alive Link to Nucleotide Sequence:NM_001242676.2Link to Protein Sequence:NP_001229605.1Re-query CCDS DB by Nucleotide ID:NM_001242676Re-query CCDS DB by Protein ID:NP_001229605Link to BLAST:NP_001229605.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229602.1 483 O43865-2 483 100% 0 0
NP_001229603.1 483 O43865-2 483 100% 0 0
NP_001229604.1 483 O43865-2 483 100% 0 0
NP_001229605.1 483 O43865-2 483 100% 0 0

Chromosomal Locations for CCDS 55620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110009055 110009145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110011214 110011357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110012362 110012462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110012897 110012999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110014763 110014857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110015425 110015531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110016344 110016460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110016667 110016730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110017495 110017583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110017946 110018016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110018373 110018467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110018552 110018650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110019051 110019119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110019548 110019626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110020731 110020851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110021674 110021680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGCAGGAGTTCACCAAATTCCCCACCAAAACTGGCCGAAGATCTTTGTCTCGCTCGATCTCACAGTCCT
CCACTGACAGCTACAGTTCAGCTGCATCCTACACAGATAGCTCTGATGATGAGGTTTCTCCCCGAGAGAA
GCAGCAAACCAACTCCAAGGGCAGCAGCAATTTCTGTGTGAAGAACATCAAGCAGGCAGAATTTGGACGC
CGGGAGATTGAGATTGCAGAGCAAGACATGTCTGCTCTGATTTCACTCAGGAAACGTGCTCAGGGGGAGA
AGCCCTTGGCTGGTGCTAAAATAGTGGGCTGTACACACATCACAGCCCAGACAGCGGTGTTGATTGAGAC
ACTCTGTGCCCTGGGGGCTCAGTGCCGCTGGTCTGCTTGTAACATCTACTCAACTCAGAATGAAGTAGCT
GCAGCACTGGCTGAGGCTGGAGTTGCAGTGTTCGCTTGGAAGGGCGAGTCAGAAGATGACTTCTGGTGGT
GTATTGACCGCTGTGTGAACATGGATGGGTGGCAGGCCAACATGATCCTGGATGATGGGGGAGACTTAAC
CCACTGGGTTTATAAGAAGTATCCAAACGTGTTTAAGAAGATCCGAGGCATTGTGGAAGAGAGCGTGACT
GGTGTTCACAGGCTGTATCAGCTCTCCAAAGCTGGGAAGCTCTGTGTTCCGGCCATGAACGTCAATGATT
CTGTTACCAAACAGAAGTTTGATAACTTGTACTGCTGCCGAGAATCCATTTTGGATGGCCTGAAGAGGAC
CACAGATGTGATGTTTGGTGGGAAACAAGTGGTGGTGTGTGGCTATGGTGAGGTAGGCAAGGGCTGCTGT
GCTGCTCTCAAAGCTCTTGGAGCAATTGTCTACATTACCGAAATCGACCCCATCTGTGCTCTGCAGGCCT
GCATGGATGGGTTCAGGGTGGTAAAGCTAAATGAAGTCATCCGGCAAGTCGATGTCGTAATAACTTGCAC
AGGAAATAAGAATGTAGTGACACGGGAGCACTTGGATCGCATGAAAAACAGTTGTATCGTATGCAATATG
GGCCACTCCAACACAGAAATCGATGTGACCAGCCTCCGCACTCCGGAGCTGACGTGGGAGCGAGTACGTT
CTCAGGTGGACCATGTCATCTGGCCAGATGGCAAACGAGTTGTCCTCCTGGCAGAGGGTCGTCTACTCAA
TTTGAGCTGCTCCACAGTTCCCACCTTTGTTCTGTCCATCACAGCCACAACACAGGCTTTGGCACTGATA
GAACTCTATAATGCACCCGAGGGGCGATACAAGCAGGATGTGTACTTGCTTCCTAAGAAAATGGATGAAT
ACGTTGCCAGCTTGCATCTGCCATCATTTGATGCCCACCTTACAGAGCTGACAGATGACCAAGCAAAATA
TCTGGGACTCAACAAAAATGGGCCATTCAAACCTAATTATTACAGATACTAA

Translation (483 aa):
MQEFTKFPTKTGRRSLSRSISQSSTDSYSSAASYTDSSDDEVSPREKQQTNSKGSSNFCVKNIKQAEFGR
REIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQTAVLIETLCALGAQCRWSACNIYSTQNEVA
AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVT
GVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVVVCGYGEVGKGCC
AALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNM
GHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVVLLAEGRLLNLSCSTVPTFVLSITATTQALALI
ELYNAPEGRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYYRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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