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Report for CCDS195.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
195.2 Public Homo sapiens 1 SLC66A1 24 110 108 CCDS HistoryNCBI Gene:54896Re-query CCDS DB by CCDS ID:195.2Re-query CCDS DB by GeneID:54896See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 195.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375153.8 ENSP00000364295.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375153.8Link to Ensembl Protein Viewer:ENSP00000364295.3Re-query CCDS DB by Nucleotide ID:ENST00000375153Re-query CCDS DB by Protein ID:ENSP00000364295
Original member Current member EBI ENST00000375155.7 ENSP00000364297.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375155.7Link to Ensembl Protein Viewer:ENSP00000364297.3Re-query CCDS DB by Nucleotide ID:ENST00000375155Re-query CCDS DB by Protein ID:ENSP00000364297
Original member Current member NCBI NM_001040125.2 NP_001035214.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040125.2Link to Protein Sequence:NP_001035214.1Re-query CCDS DB by Nucleotide ID:NM_001040125Re-query CCDS DB by Protein ID:NP_001035214Link to BLAST:NP_001035214.1
Original member Current member NCBI NM_017765.3 NP_060235.2 Accepted alive Link to Nucleotide Sequence:NM_017765.3Link to Protein Sequence:NP_060235.2Re-query CCDS DB by Nucleotide ID:NM_017765Re-query CCDS DB by Protein ID:NP_060235Link to BLAST:NP_060235.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035214.1 291 Q6ZP29-1 291 100% 0 0
NP_060235.2 291 Q6ZP29-1 291 100% 0 0

Chromosomal Locations for CCDS 195.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19317678 19317841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19324633 19324762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19325495 19325582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19326245 19326387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19326531 19326623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19327227 19327412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19328572 19328643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGTCTGGAAGAAACTGGGCTCCCGCAACTTCTCCAGCTGCCCCAGTGGCTCCATCCAGTGGATATGGG
ATGTGTTGGGTGAATGTGCCCAGGACGGCTGGGACGAGGCCAGCGTGGGCCTGGGCTTGATCTCCATTCT
CTGCTTTGCTGCATCTACCTTCCCCCAGTTCATCAAAGCCTACAAGACGGGCAACATGGACCAGGCGCTG
TCCCTGTGGTTCCTCCTGGGCTGGATTGGCGGAGACTCCTGCAACCTCATCGGCTCCTTCCTTGCTGACC
AGCTGCCCCTGCAGACCTACACGGCTGTGTATTATGTCTTGGCAGACCTGGTGATGCTGACGCTGTACTT
TTACTACAAGTTCAGGACGCGCCCCTCTCTGTTGTCTGCCCCCATCAACTCCGTGCTGTTGTTCCTCATG
GGGATGGCGTGCGCCACACCGCTGCTGAGTGCTGCTGGGCCCGTGGCTGCCCCTAGGGAAGCCTTCCGGG
GGCGGGCGCTCCTGTCCGTGGAGTCGGGCAGCAAGCCCTTCACCCGGCAGGAAGTCATTGGCTTCGTCAT
CGGCTCCATCTCCAGCGTGTTGTACCTGCTTTCCCGGCTGCCTCAGATCCGCACCAACTTCCTCCGGAAG
TCCACCCAGGGGATCTCCTACTCTCTGTTCGCGCTGGTGATGCTGGGGAACACGCTGTATGGGCTGAGCG
TGCTGCTCAAAAACCCCGAGGAGGGCCAGAGCGAGGGCAGCTACCTGCTGCACCACCTGCCCTGGCTTGT
GGGCAGCCTGGGCGTGCTGCTGCTCGACACCATCATCTCCATCCAGTTCCTGGTGTACAGGCGCAGCACC
GCCGCCTCGGAGCTTGAGCCCCTCCTCCCCAGCTGA

Translation (291 aa):
MVWKKLGSRNFSSCPSGSIQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKAYKTGNMDQAL
SLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYKFRTRPSLLSAPINSVLLFLM
GMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQEVIGFVIGSISSVLYLLSRLPQIRTNFLRK
STQGISYSLFALVMLGNTLYGLSVLLKNPEEGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRST
AASELEPLLPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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