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Report for CCDS3197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3197.1 Public Homo sapiens 3 SLITRK3 24 110 108 CCDS HistoryNCBI Gene:22865Re-query CCDS DB by CCDS ID:3197.1Re-query CCDS DB by GeneID:22865See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3197.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000241274.3 ENSP00000241274.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000241274.3Link to Ensembl Protein Viewer:ENSP00000241274.3Re-query CCDS DB by Nucleotide ID:ENST00000241274Re-query CCDS DB by Protein ID:ENSP00000241274
Original member Current member EBI ENST00000475390.2 ENSP00000420091.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000475390.2Link to Ensembl Protein Viewer:ENSP00000420091.1Re-query CCDS DB by Nucleotide ID:ENST00000475390Re-query CCDS DB by Protein ID:ENSP00000420091
Original member Current member NCBI NM_001318810.2 NP_001305739.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318810.2Link to Protein Sequence:NP_001305739.1Re-query CCDS DB by Nucleotide ID:NM_001318810Re-query CCDS DB by Protein ID:NP_001305739Link to BLAST:NP_001305739.1
Original member Current member NCBI NM_001318811.2 NP_001305740.1 Accepted alive Link to Nucleotide Sequence:NM_001318811.2Link to Protein Sequence:NP_001305740.1Re-query CCDS DB by Nucleotide ID:NM_001318811Re-query CCDS DB by Protein ID:NP_001305740Link to BLAST:NP_001305740.1
Original member Current member NCBI NM_014926.4 NP_055741.2 Accepted alive Link to Nucleotide Sequence:NM_014926.4Link to Protein Sequence:NP_055741.2Re-query CCDS DB by Nucleotide ID:NM_014926Re-query CCDS DB by Protein ID:NP_055741Link to BLAST:NP_055741.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305739.1 977 O94933 977 100% 0 0
NP_001305740.1 977 O94933 977 100% 0 0
NP_055741.2 977 O94933 977 100% 0 0

Chromosomal Locations for CCDS 3197.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 165187897 165190830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2934 nt):
ATGAAACCTTCCATAGCTGAGATGCTTCACAGAGGAAGGATGTTGTGGATAATTCTTCTAAGCACAATTG
CTCTAGGATGGACTACCCCGATTCCCCTAATAGAGGACTCAGAGGAAATAGATGAGCCCTGTTTTGATCC
ATGCTACTGTGAAGTTAAAGAAAGCCTCTTTCATATACATTGTGACAGTAAAGGATTTACAAATATTAGT
CAGATTACCGAGTTCTGGTCAAGACCTTTTAAACTGTATCTGCAGAGGAATTCTATGAGGAAATTATATA
CCAACAGTTTTCTTCATTTGAATAATGCTGTGTCTATTAATCTTGGGAACAATGCATTGCAGGACATTCA
GACTGGAGCTTTCAATGGTCTTAAGATTTTAAAGAGACTATATCTACATGAAAACAAACTAGATGTCTTC
AGAAATGACACCTTCCTTGGCTTGGAAAGTCTAGAATATCTGCAGGCAGATTACAATGTCATTAAACGTA
TTGAGAGTGGGGCATTTCGGAACCTAAGTAAATTGAGGGTTCTGATTTTAAATGATAATCTCATCCCCAT
GCTTCCAACCAATTTATTTAAGGCTGTCTCTTTAACCCATTTGGACCTACGTGGAAATAGGTTAAAGGTT
CTTTTTTACCGAGGAATGCTAGATCACATTGGCAGAAGCCTGATGGAGCTCCAGCTGGAAGAAAACCCTT
GGAACTGTACATGTGAAATTGTACAACTGAAGAGTTGGCTGGAACGCATTCCTTATACTGCCCTGGTGGG
AGACATTACCTGTGAGACCCCTTTCCACTTCCATGGAAAGGACCTACGAGAAATCAGGAAGACAGAACTC
TGTCCCTTGTTGTCTGACTCTGAGGTAGAGGCTAGTTTGGGAATTCCACATTCGTCATCAAGTAAGGAGA
ATGCATGGCCAACTAAGCCTTCCTCAATGCTATCCTCTGTTCATTTTACTGCTTCTTCTGTCGAATACAA
GTCCTCAAATAAACAGCCTAAGCCCACCAAACAGCCTCGAACACCAAGGCCACCCTCCACCTCCCAAGCT
TTATATCCTGGTCCAAACCAGCCTCCCATTGCTCCTTATCAGACCAGACCACCAATCCCCATTATATGCC
CCACTGGGTGTACCTGTAATTTGCACATCAATGACCTTGGCTTGACTGTCAACTGCAAAGAGCGAGGATT
TAATAACATTTCTGAACTTCTTCCAAGGCCCTTGAATGCCAAGAAACTGTATCTGAGTAGCAATCTGATT
CAGAAAATATACCGTTCTGATTTTTGGAATTTTTCTTCCTTGGATCTCTTGCATCTGGGGAACAATCGTA
TTTCCTATGTCCAAGATGGGGCCTTTATCAACTTGCCCAACTTAAAGAGCCTCTTCCTTAATGGCAACGA
TATAGAGAAGCTGACACCAGGCATGTTCCGAGGCCTACAGAGTTTGCACTACTTGTACTTTGAGTTCAAT
GTCATCCGGGAAATCCAGCCTGCAGCCTTCAGCCTCATGCCCAACTTGAAGCTGCTATTCCTCAATAATA
ACTTACTGAGGACTCTGCCAACAGACGCCTTTGCTGGCACATCCCTGGCCCGGCTCAACCTGAGGAAGAA
CTACTTCCTCTATCTTCCCGTGGCTGGTGTCCTGGAACACTTGAATGCCATTGTCCAGATAGACCTCAAT
GAGAATCCTTGGGACTGCACCTGTGACCTGGTCCCCTTTAAACAGTGGATCGAAACCATCAGCTCAGTCA
GTGTGGTTGGTGATGTGCTTTGCAGGAGCCCTGAGAACCTCACGCACCGTGATGTGCGCACTATTGAGCT
GGAAGTTCTTTGCCCAGAGATGCTGCACGTTGCACCAGCTGGAGAATCCCCAGCCCAGCCTGGAGATTCT
CACCTTATTGGGGCACCAACCAGTGCATCACCTTATGAGTTTTCTCCTCCTGGGGGCCCTGTGCCACTTT
CTGTGTTAATTCTCAGCCTGCTGGTTCTGTTTTTCTCAGCAGTCTTTGTTGCTGCAGGCCTCTTTGCCTA
CGTGCTCCGAAGGCGTCGAAAGAAGCTGCCCTTCAGAAGCAAGCGGCAGGAAGGTGTGGACCTTACTGGC
ATCCAAATGCAATGCCACAGGCTGTTTGAGGATGGTGGAGGTGGTGGTGGCGGAAGTGGGGGTGGTGGTC
GACCAACTCTTTCCTCTCCAGAGAAGGCCCCTCCCGTGGGTCATGTGTATGAGTACATCCCCCACCCGGT
TACCCAAATGTGCAACAACCCCATCTACAAGCCTCGTGAGGAGGAGGAGGTGGCTGTTTCATCAGCCCAA
GAAGCAGGGAGTGCAGAACGTGGGGGTCCAGGGACACAACCACCGGGAATGGGTGAGGCTCTCCTAGGAA
GTGAGCAGTTTGCTGAGACACCCAAGGAGAACCATAGTAACTACCGGACCTTGCTGGAAAAAGAGAAGGA
GTGGGCCCTAGCAGTGTCCAGCTCCCAGCTTAACACCATAGTGACGGTGAATCACCATCACCCTCACCAC
CCAGCAGTTGGTGGGGTTTCAGGAGTAGTTGGGGGAACTGGGGGAGACTTGGCAGGGTTCCGCCACCATG
AGAAAAATGGTGGGGTGGTGCTGTTTCCTCCTGGGGGAGGCTGTGGTAGTGGCAGTATGCTACTAGATCG
AGAGAGGCCACAGCCTGCCCCCTGCACAGTGGGATTTGTGGACTGTCTCTATGGAACAGTGCCCAAATTA
AAGGAACTGCACGTGCACCCTCCTGGCATGCAATACCCAGACTTACAGCAGGATGCCAGGCTCAAAGAAA
CCCTTCTCTTCTCGGCTGGAAAGGGCTTCACAGACCACCAAACCCAAAAAAGTGATTACCTCGAGTTAAG
GGCCAAACTTCAAACCAAGCCGGATTACCTCGAAGTCCTGGAGAAGACAACATACAGGTTCTAA

Translation (977 aa):
MKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNIS
QITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVF
RNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPMLPTNLFKAVSLTHLDLRGNRLKV
LFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIRKTEL
CPLLSDSEVEASLGIPHSSSSKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQA
LYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLI
QKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFN
VIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLN
ENPWDCTCDLVPFKQWIETISSVSVVGDVLCRSPENLTHRDVRTIELEVLCPEMLHVAPAGESPAQPGDS
HLIGAPTSASPYEFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTG
IQMQCHRLFEDGGGGGGGSGGGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAVSSAQ
EAGSAERGGPGTQPPGMGEALLGSEQFAETPKENHSNYRTLLEKEKEWALAVSSSQLNTIVTVNHHHPHH
PAVGGVSGVVGGTGGDLAGFRHHEKNGGVVLFPPGGGCGSGSMLLDRERPQPAPCTVGFVDCLYGTVPKL
KELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTQKSDYLELRAKLQTKPDYLEVLEKTTYRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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