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Report for CCDS1055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1055.1 Public Homo sapiens 1 SLC39A1 24 110 108 CCDS HistoryNCBI Gene:27173Re-query CCDS DB by CCDS ID:1055.1Re-query CCDS DB by GeneID:27173See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1055.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310483.10 ENSP00000309710.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310483.10Link to Ensembl Protein Viewer:ENSP00000309710.6Re-query CCDS DB by Nucleotide ID:ENST00000310483Re-query CCDS DB by Protein ID:ENSP00000309710
Original member Current member EBI ENST00000356205.9 ENSP00000348535.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356205.9Link to Ensembl Protein Viewer:ENSP00000348535.4Re-query CCDS DB by Nucleotide ID:ENST00000356205Re-query CCDS DB by Protein ID:ENSP00000348535
Original member Current member EBI ENST00000368621.5 ENSP00000357610.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368621.5Link to Ensembl Protein Viewer:ENSP00000357610.1Re-query CCDS DB by Nucleotide ID:ENST00000368621Re-query CCDS DB by Protein ID:ENSP00000357610
Original member Current member EBI ENST00000368623.7 ENSP00000357612.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368623.7Link to Ensembl Protein Viewer:ENSP00000357612.3Re-query CCDS DB by Nucleotide ID:ENST00000368623Re-query CCDS DB by Protein ID:ENSP00000357612
Original member Current member EBI ENST00000617697.4 ENSP00000479421.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617697.4Link to Ensembl Protein Viewer:ENSP00000479421.1Re-query CCDS DB by Nucleotide ID:ENST00000617697Re-query CCDS DB by Protein ID:ENSP00000479421
Original member Current member EBI ENST00000621013.4 ENSP00000484182.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621013.4Link to Ensembl Protein Viewer:ENSP00000484182.1Re-query CCDS DB by Nucleotide ID:ENST00000621013Re-query CCDS DB by Protein ID:ENSP00000484182
Original member Current member NCBI NM_001271957.2 NP_001258886.1 Accepted alive Link to Nucleotide Sequence:NM_001271957.2Link to Protein Sequence:NP_001258886.1Re-query CCDS DB by Nucleotide ID:NM_001271957Re-query CCDS DB by Protein ID:NP_001258886Link to BLAST:NP_001258886.1
Original member Current member NCBI NM_001271958.2 NP_001258887.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271958.2Link to Protein Sequence:NP_001258887.1Re-query CCDS DB by Nucleotide ID:NM_001271958Re-query CCDS DB by Protein ID:NP_001258887Link to BLAST:NP_001258887.1
Original member Current member NCBI NM_001271959.2 NP_001258888.1 Accepted alive Link to Nucleotide Sequence:NM_001271959.2Link to Protein Sequence:NP_001258888.1Re-query CCDS DB by Nucleotide ID:NM_001271959Re-query CCDS DB by Protein ID:NP_001258888Link to BLAST:NP_001258888.1
Original member Current member NCBI NM_001271960.2 NP_001258889.1 Accepted alive Link to Nucleotide Sequence:NM_001271960.2Link to Protein Sequence:NP_001258889.1Re-query CCDS DB by Nucleotide ID:NM_001271960Re-query CCDS DB by Protein ID:NP_001258889Link to BLAST:NP_001258889.1
Original member Current member NCBI NM_014437.5 NP_055252.2 Accepted alive Link to Nucleotide Sequence:NM_014437.5Link to Protein Sequence:NP_055252.2Re-query CCDS DB by Nucleotide ID:NM_014437Re-query CCDS DB by Protein ID:NP_055252Link to BLAST:NP_055252.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258886.1 324 Q9NY26-1 324 100% 0 0
NP_001258887.1 324 Q9NY26-1 324 100% 0 0
NP_001258888.1 324 Q9NY26-1 324 100% 0 0
NP_001258889.1 324 Q9NY26-1 324 100% 0 0
NP_055252.2 324 Q9NY26-1 324 100% 0 0

Chromosomal Locations for CCDS 1055.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153960098 153960754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153962220 153962350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153962529 153962715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGGGCCCTGGGGAGAGCCAGAGCTCCTGGTGTGGCGCCCCGAGGCGGTAGCTTCAGAGCCTCCAGTGC
CTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGT
GCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGC
CTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGG
CTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACGCTCCAGTTCCCACTGCAAGAGTTCATCCTGGC
CATGGGCTTCTTCCTGGTCCTGGTGATGGAGCAGATCACACTGGCTTACAAGGAGCAGTCAGGGCCGTCA
CCTCTGGAGGAAACAAGGGCTCTGCTGGGAACAGTGAATGGTGGGCCGCAGCATTGGCATGATGGGCCAG
GGGTCCCACAGGCGAGTGGAGCCCCAGCAACCCCCTCAGCCTTGCGTGCCTGTGTACTGGTGTTCTCCCT
GGCCCTCCACTCCGTGTTCGAGGGGCTGGCGGTAGGGCTGCAGCGAGACCGGGCTCGGGCCATGGAGCTG
TGCCTGGCTTTGCTGCTCCACAAGGGCATCCTGGCTGTCAGCCTGTCCCTGCGGCTGTTGCAGAGCCACC
TTAGGGCACAGGTGGTGGCTGGCTGTGGGATCCTCTTCTCATGCATGACACCTCTAGGCATCGGGCTGGG
TGCAGCTCTGGCAGAGTCGGCAGGACCTCTGCACCAGCTGGCCCAGTCTGTGCTAGAGGGCATGGCAGCT
GGCACCTTTCTCTATATCACCTTTCTGGAAATCCTGCCCCAGGAGCTGGCCAGTTCTGAGCAAAGGATCC
TCAAGGTCATTCTGCTCCTAGCAGGCTTTGCCCTGCTCACTGGCCTGCTCTTCATCCAAATCTAG

Translation (324 aa):
MGPWGEPELLVWRPEAVASEPPVPVGLEVKLGALVLLLVLTLLCSLVPICVLRRPGANHEGSASRQKALS
LVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSGPS
PLEETRALLGTVNGGPQHWHDGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMEL
CLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLEGMAA
GTFLYITFLEILPQELASSEQRILKVILLLAGFALLTGLLFIQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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