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Report for CCDS48085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48085.1 Public Homo sapiens X GLRA2 24 110 108 CCDS HistoryNCBI Gene:2742Re-query CCDS DB by CCDS ID:48085.1Re-query CCDS DB by GeneID:2742See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355020.8 ENSP00000347123.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355020.8Link to Ensembl Protein Viewer:ENSP00000347123.4Re-query CCDS DB by Nucleotide ID:ENST00000355020Re-query CCDS DB by Protein ID:ENSP00000347123
Original member Current member NCBI NM_001118886.2 NP_001112358.1 Accepted alive Link to Nucleotide Sequence:NM_001118886.2Link to Protein Sequence:NP_001112358.1Re-query CCDS DB by Nucleotide ID:NM_001118886Re-query CCDS DB by Protein ID:NP_001112358Link to BLAST:NP_001112358.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001112358.1 452 P23416-2 452 100% 0 0

Chromosomal Locations for CCDS 48085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 14530058 14530125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14532239 14532372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14574492 14574559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14581183 14581406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14604315 14604397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14607131 14607268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14608991 14609205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14690710 14690859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 14730207 14730485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGAACCGGCAGCTAGTGAACATTTTGACAGCCTTGTTTGCATTTTTCTTAGAGACAAACCACTTCAGGA
CGGCTTTCTGCAAAGACCATGACTCCAGGTCTGGAAAACAACCTTCACAGACCCTATCTCCTTCAGATTT
CTTGGACAAGTTAATGGGAAGGACATCAGGATATGATGCAAGAATCAGGCCAAATTTTAAAGGGCCTCCT
GTAAATGTTACCTGCAACATATTTATCAACAGCTTTGGGTCAATAGCAGAAACTACAATGGACTACCGAG
TGAATATTTTTCTGAGACAACAGTGGAATGATTCACGGCTGGCGTACAGTGAGTACCCAGATGACTCCCT
GGACTTGGACCCATCCATGCTAGACTCCATTTGGAAACCAGATTTGTTCTTTGCCAATGAGAAGGGTGCC
AACTTCCACGATGTCACCACTGACAACAAATTGCTACGGATTTCGAAAAATGGCAAAGTGCTCTACAGTA
TCAGACTCACCTTGACCTTATCCTGTCCCATGGACTTGAAGAACTTTCCGATGGATGTCCAGACCTGTAC
AATGCAGCTGGAGAGTTTTGGGTACACGATGAATGACCTGATATTTGAGTGGTTAAGTGATGGTCCAGTG
CAAGTTGCTGAAGGATTGACCCTGCCCCAGTTTATTTTGAAAGAAGAGAAGGAACTTGGCTACTGTACAA
AGCACTACAACACTGGAAAGTTTACCTGCATTGAGGTCAAGTTTCATCTGGAACGCCAAATGGGATATTA
TTTGATCCAGATGTACATCCCAAGCCTGCTTATAGTAATTTTGTCCTGGGTTTCCTTTTGGATAAATATG
GATGCAGCCCCTGCCAGGGTCGCACTGGGCATCACCACAGTCTTAACGATGACCACCCAGAGTTCAGGCT
CCAGGGCATCTCTGCCAAAGGTCTCCTATGTAAAAGCGATTGACATCTGGATGGCGGTGTGCCTTCTGTT
TGTGTTTGCTGCCTTACTGGAATACGCAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGC
CTCCGAAGAAGACAGAAGAGGCAGAATAAGGAAGAAGACGTTACTCGTGAAAGTCGTTTTAATTTTAGCG
GTTATGGGATGGGTCACTGCCTCCAAGTGAAAGATGGAACAGCTGTCAAGGCCACACCTGCCAACCCACT
CCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACG
ATATCTCGAGCTGCCTTCCCATTGGCCTTCCTCATTTTCAACATCTTTTACTGGATCACATACAAGATCA
TTCGGCATGAAGATGTCCACAAGAAATAG

Translation (452 aa):
MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDARIRPNFKGPP
VNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGA
NFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPV
QVAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINM
DAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLR
LRRRQKRQNKEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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