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Report for CCDS6254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6254.1 Public Homo sapiens 8 SLC26A7 24 110 108 CCDS HistoryNCBI Gene:115111Re-query CCDS DB by CCDS ID:6254.1Re-query CCDS DB by GeneID:115111See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276609.8 ENSP00000276609.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276609.8Link to Ensembl Protein Viewer:ENSP00000276609.3Re-query CCDS DB by Nucleotide ID:ENST00000276609Re-query CCDS DB by Protein ID:ENSP00000276609
Original member Current member EBI ENST00000523719.5 ENSP00000428849.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523719.5Link to Ensembl Protein Viewer:ENSP00000428849.1Re-query CCDS DB by Nucleotide ID:ENST00000523719Re-query CCDS DB by Protein ID:ENSP00000428849
Original member Current member EBI ENST00000617233.2 ENSP00000482549.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617233.2Link to Ensembl Protein Viewer:ENSP00000482549.1Re-query CCDS DB by Nucleotide ID:ENST00000617233Re-query CCDS DB by Protein ID:ENSP00000482549
Original member Current member NCBI NM_001282356.2 NP_001269285.1 Accepted alive Link to Nucleotide Sequence:NM_001282356.2Link to Protein Sequence:NP_001269285.1Re-query CCDS DB by Nucleotide ID:NM_001282356Re-query CCDS DB by Protein ID:NP_001269285Link to BLAST:NP_001269285.1
Original member Current member NCBI NM_052832.4 NP_439897.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052832.4Link to Protein Sequence:NP_439897.1Re-query CCDS DB by Nucleotide ID:NM_052832Re-query CCDS DB by Protein ID:NP_439897Link to BLAST:NP_439897.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269285.1 656 Q8TE54-1 656 100% 0 0
NP_439897.1 656 Q8TE54-1 656 100% 0 0

Chromosomal Locations for CCDS 6254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 91249652 91249844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91289136 91289246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91295531 91295703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91318216 91318380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91334295 91334447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91338150 91338232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91340404 91340551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91343353 91343466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91351810 91351887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91352901 91352996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91362353 91362459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91363472 91363538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91366580 91366717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91369785 91369833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91389338 91389438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91393797 91393851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91393936 91394039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91395062 91395097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGACAGGAGCAAAGAGGAAAAAGAAAAGCATGCTTTGGAGCAAGATGCATACCCCCCAGTGTGAAGACA
TTATACAGTGGTGTAGAAGGCGACTGCCCATTTTGGATTGGGCACCACATTACAATCTGAAAGAAAACTT
GCTTCCAGACACTGTGTCTGGGATAATGTTGGCAGTTCAACAGGTGACCCAAGGATTGGCCTTTGCTGTT
CTCTCATCTGTGCACCCAGTGTTTGGTTTATATGGGTCTCTGTTTCCTGCCATAATTTATGCCATATTTG
GAATGGGACATCATGTTGCCACAGGCACCTTTGCCTTGACATCCTTAATATCAGCCAACGCCGTGGAACG
GATTGTCCCTCAGAACATGCAGAATCTCACCACACAGAGTAACACAAGCGTGCTGGGCTTATCCGACTTT
GAAATGCAAAGGATCCACGTTGCTGCAGCAGTTTCCTTCTTGGGAGGTGTGATTCAGGTGGCCATGTTTG
TGCTGCAACTGGGCAGTGCCACATTTGTGGTCACAGAGCCTGTGATCAGCGCAATGACAACTGGGGCTGC
CACCCATGTGGTGACTTCACAAGTCAAATATCTCTTGGGAATGAAAATGCCATATATATCCGGACCACTT
GGATTCTTTTATATTTATGCATATGTTTTTGAAAACATCAAGTCTGTGCGACTGGAAGCATTGCTTTTAT
CCTTGCTGAGCATTGTGGTCCTTGTTCTTGTTAAAGAGCTGAATGAACAGTTTAAAAGGAAAATTAAAGT
TGTTCTTCCTGTAGATTTAGTTTTGATTATTGCTGCATCATTTGCTTGTTATTGCACCAATATGGAAAAC
ACATATGGATTAGAAGTAGTTGGTCATATTCCACAAGGAATTCCCTCACCTAGAGCTCCCCCGATGAACA
TCCTCTCTGCGGTGATCACTGAAGCTTTCGGAGTGGCACTTGTAGGCTATGTGGCCTCACTGGCTCTTGC
TCAAGGATCTGCCAAAAAATTCAAATATTCAATTGATGACAACCAGGAATTTTTGGCCCATGGCCTCAGC
AATATAGTTTCTTCATTTTTCTTCTGCATACCAAGTGCTGCTGCCATGGGAAGGACGGCTGGCCTGTACA
GCACAGGAGCGAAGACACAGGTGGCTTGTCTAATATCTTGCATTTTCGTCCTTATAGTCATCTATGCAAT
AGGACCTTTGCTTTACTGGCTGCCCATGTGTGTCCTTGCAAGCATTATTGTTGTGGGACTGAAGGGAATG
CTAATACAGTTCCGAGATTTAAAAAAATATTGGAATGTGGATAAAATCGATTGGGGAATATGGGTCAGTA
CATATGTATTTACAATATGCTTTGCTGCCAATGTGGGACTGCTGTTTGGTGTTGTTTGTACCATAGCTAT
AGTGATAGGACGCTTCCCAAGAGCAATGACTGTAAGTATAAAAAATATGAAAGAAATGGAATTTAAAGTG
AAGACAGAAATGGACAGTGAAACCCTGCAGCAGGTGAAAATTATCTCAATAAACAACCCGCTTGTTTTCC
TGAATGCAAAAAAATTTTATACTGATTTAATGAACATGATCCAAAAGGAAAATGCCTGTAATCAGCCACT
TGATGATATCAGCAAGTGTGAACAAAACACATTGCTTAATTCCCTATCCAATGGCAACTGCAATGAAGAA
GCTTCACAGTCCTGCCCTAATGAGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACCTTTTTTGACT
ATTCTGGAGTCTCCATGCTTGTTGAGGTTTACATGGACTGTAAAGGCAGGAGTGTGGATGTATTGTTAGC
CCATTGTACAGCTTCCTTGATAAAAGCAATGACGTATTATGGAAACCTAGACTCAGAGAAACCAATTTTT
TTTGAATCGGTATCTGCTGCAATAAGTCATATCCATTCAAATAAGAATTTGAGCAAACTCAGTGACCACA
GTGAAGTCTGA

Translation (656 aa):
MTGAKRKKKSMLWSKMHTPQCEDIIQWCRRRLPILDWAPHYNLKENLLPDTVSGIMLAVQQVTQGLAFAV
LSSVHPVFGLYGSLFPAIIYAIFGMGHHVATGTFALTSLISANAVERIVPQNMQNLTTQSNTSVLGLSDF
EMQRIHVAAAVSFLGGVIQVAMFVLQLGSATFVVTEPVISAMTTGAATHVVTSQVKYLLGMKMPYISGPL
GFFYIYAYVFENIKSVRLEALLLSLLSIVVLVLVKELNEQFKRKIKVVLPVDLVLIIAASFACYCTNMEN
TYGLEVVGHIPQGIPSPRAPPMNILSAVITEAFGVALVGYVASLALAQGSAKKFKYSIDDNQEFLAHGLS
NIVSSFFFCIPSAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGM
LIQFRDLKKYWNVDKIDWGIWVSTYVFTICFAANVGLLFGVVCTIAIVIGRFPRAMTVSIKNMKEMEFKV
KTEMDSETLQQVKIISINNPLVFLNAKKFYTDLMNMIQKENACNQPLDDISKCEQNTLLNSLSNGNCNEE
ASQSCPNEKCYLILDCSGFTFFDYSGVSMLVEVYMDCKGRSVDVLLAHCTASLIKAMTYYGNLDSEKPIF
FESVSAAISHIHSNKNLSKLSDHSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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