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Report for CCDS55814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55814.1 Public Homo sapiens 12 PPFIBP1 24 110 108 CCDS HistoryNCBI Gene:8496Re-query CCDS DB by CCDS ID:55814.1Re-query CCDS DB by GeneID:8496See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55814.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537927.5 ENSP00000445425.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537927.5Link to Ensembl Protein Viewer:ENSP00000445425.1Re-query CCDS DB by Nucleotide ID:ENST00000537927Re-query CCDS DB by Protein ID:ENSP00000445425
Original member Current member NCBI NM_001198915.2 NP_001185844.1 Accepted alive Link to Nucleotide Sequence:NM_001198915.2Link to Protein Sequence:NP_001185844.1Re-query CCDS DB by Nucleotide ID:NM_001198915Re-query CCDS DB by Protein ID:NP_001185844Link to BLAST:NP_001185844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185844.1 858 Q86W92-3 858 100% 0 0

Chromosomal Locations for CCDS 55814.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 27647831 27647842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27650010 27650141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27654722 27654814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27655143 27655235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27656616 27656730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27660884 27660945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27664362 27664437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27667166 27667320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27671431 27671546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27672427 27672483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27673767 27673827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27674192 27674221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27676428 27676599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27679489 27679639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27679933 27680061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27681546 27681696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27682387 27682498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27682615 27682703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27687385 27687507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27688298 27688423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27689015 27689203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27691749 27691928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27692591 27692656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27692796 27692882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGCTGCAGCAGGAGCTTCTAAGTAGGACATCCTTAGAAACTCAGAAGTTGGATCTGATGGCTGAAATAT
CTAACTTGAAGTTGAAACTGACAGCTGTAGAGAAGGACAGATTGGATTATGAAGATAAGTTCAGAGACAC
AGAGGGGCTGATTCAGGAGATCAATGATTTGAGGTTAAAAGTTAGTGAAATGGACAGTGAGAGACTTCAG
TATGAAAAAAAGCTTAAATCAACCAAATCTTTAATGGCCAAACTTTCTAGCATGAAAATCAAGGTGGGTC
AGATGCAGTATGAAAAGCAGCGGATGGAACAAAAATGGGAGTCACTGAAGGATGAACTGGCATCTTTAAA
AGAACAACTAGAAGAAAAGGAATCTGAAGTAAAAAGGCTACAAGAAAAATTGGTTTGCAAGATGAAAGGA
GAAGGGGTTGAAATTGTTGATAGAGACATCGAAGTACAAAAAATGAAAAAAGCTGTGGAGTCCTTGATGG
CAGCAAATGAAGAAAAGGATCGGAAAATAGAAGATCTTCGACAGTGCCTGAACAGGTACAAGAAAATGCA
AGACACGGTGGTACTGGCCCAAGGCAAAGATGGAGAATATGAAGAGCTGCTCAATTCCAGTTCCATCTCC
TCTTTGCTGGATGCACAGGGTTTCAGTGATCTGGAGAAAAGTCCATCACCCACTCCAGTAATGGGATCTC
CCAGTTGTGACCCATTTAACACAAGTGTTCCCGAAGAGTTCCATACTACCATCTTGCAAGTTTCCATCCC
TTCATTATTGCCAGCAACTGTAAGCATGGAAACTTCTGAAAAATCAAAGTTGACTCCTAAGCCAGAGACT
TCATTTGAAGAAAATGATGGAAACATAATCCTTGGTGCCACTGTTGATACCCAACTGTGTGATAAACTTT
TAACTTCAAGTCTGCAGAAGTCCAGCAGCCTGGGCAATCTGAAGAAAGAGACATCTGATGGGGAAAAGGA
AACTATTCAGAAGACTTCAGAGGACAGAGCTCCGGCAGAAAGCAGGCCATTTGGGACCCTTCCTCCCAGG
CCCCCAGGGCAGGACACCTCCATGGATGACAACCCCTTCGGCACTCGAAAAGTCAGATCTTCCTTTGGCC
GGGGCTTTTTTAAAATCAAAAGTAACAAGAGAACAGCAAGTGCACCAAACTTAGCTGAAACAGAAAAAGA
GACAGCAGAGCACCTAGATCTGGCTGGTGCTTCTTCTCGGCCAAAAGATTCACAGAGGAACAGTCCCTTC
CAGATACCGCCTCCATCTCCAGATTCCAAAAAGAAATCCAGAGGTATCATGAAACTCTTTGGAAAACTTA
GGAGAAGTCAATCAACTACATTCAACCCAGATGACATGTCTGAGCCTGAATTCAAAAGAGGAGGGACAAG
GGCAACCGCGGGGCCCCGATTAGGTTGGTCTCGAGACTTGGGACAGTCTAACAGTGACTTGGATATGCCA
TTTGCCAAGTGGACCAAGGAGCAGGTTTGCAATTGGCTGATGGAACAGGGCTTGGGCTCGTACCTGAATT
CTGGCAAGCACTGGATTGCATCTGGCCAAACGCTTTTGCAGGCTTCTCAACAAGATCTAGAGAAGGAACT
TGGAATCAAGCATTCACTTCATCGAAAGAAACTCCAGCTAGCACTCCAAGCCCTGGGATCTGAAGAAGAA
ACCAATCATGGGAAGCTGGATTTCAACTGGGTCACTAGATGGTTGGATGACATTGGCCTCCCTCAATATA
AGACCCAGTTTGATGAAGGACGGGTTGATGGTCGAATGCTACATTACATGACTGTTGATGACTTACTGTC
TCTGAAGGTTGTAAGTGTGCTACACCATCTCAGTATCAAAAGGGCCATCCAGGTCCTGAGGATCAATAAC
TTTGAACCAAACTGTCTACGGAGGCGGCCATCTGATGAGAATACCATCGCCCCATCAGAAGTTCAGAAGT
GGACTAACCATCGAGTGATGGAGTGGCTGCGCTCCGTGGACTTGGCAGAATATGCGCCCAATCTCAGAGG
CAGTGGTGTCCATGGTGGGCTCATGGTTCTAGAGCCTCGTTTTAACGTAGAAACAATGGCTCAGTTATTG
AACATCCCACCCAATAAGACTTTGCTGCGAAGACATTTGGCCACTCATTTCAACCTTCTGATTGGGGCTG
AGGCACAGCACCAGAAGCGAGATGCCATGGAGCTGCCGGATTATGTACTTCTAACAGCTACTGCCAAAGT
GAAGCCAAAGAAACTTGCCTTTAGCAATTTTGGGAATTTGAGAAAGAAGAAACAGGAAGATGGTGAAGAA
TATGTTTGTCCAATGGAATTGGGACAGGCATCAGGAAGTGCATCTAAGAAAGGATTTAAACCTGGTTTGG
ATATGCGCCTGTATGAGGAAGATGATTTGGACCGGTTAGAGCAGATGGAAGATTCAGAAGGGACAGTGAG
ACAGATAGGTGCATTCTCTGAAGGCATCAACAATCTGACGCACATGTTAAAAGAAGATGACATGTTTAAA
GATTTTGCTGCCCGTTCCCCCAGTGCCAGCATTACAGATGAAGACTCAAACGTTTGA

Translation (858 aa):
MLQQELLSRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQEINDLRLKVSEMDSERLQ
YEKKLKSTKSLMAKLSSMKIKVGQMQYEKQRMEQKWESLKDELASLKEQLEEKESEVKRLQEKLVCKMKG
EGVEIVDRDIEVQKMKKAVESLMAANEEKDRKIEDLRQCLNRYKKMQDTVVLAQGKDGEYEELLNSSSIS
SLLDAQGFSDLEKSPSPTPVMGSPSCDPFNTSVPEEFHTTILQVSIPSLLPATVSMETSEKSKLTPKPET
SFEENDGNIILGATVDTQLCDKLLTSSLQKSSSLGNLKKETSDGEKETIQKTSEDRAPAESRPFGTLPPR
PPGQDTSMDDNPFGTRKVRSSFGRGFFKIKSNKRTASAPNLAETEKETAEHLDLAGASSRPKDSQRNSPF
QIPPPSPDSKKKSRGIMKLFGKLRRSQSTTFNPDDMSEPEFKRGGTRATAGPRLGWSRDLGQSNSDLDMP
FAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEE
TNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINN
FEPNCLRRRPSDENTIAPSEVQKWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLL
NIPPNKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVLLTATAKVKPKKLAFSNFGNLRKKKQEDGEE
YVCPMELGQASGSASKKGFKPGLDMRLYEEDDLDRLEQMEDSEGTVRQIGAFSEGINNLTHMLKEDDMFK
DFAARSPSASITDEDSNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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