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Report for CCDS3100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3100.1 Public Homo sapiens 3 MRAS 24 110 108 CCDS HistoryNCBI Gene:22808Re-query CCDS DB by CCDS ID:3100.1Re-query CCDS DB by GeneID:22808See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3100.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289104.8 ENSP00000289104.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289104.8Link to Ensembl Protein Viewer:ENSP00000289104.4Re-query CCDS DB by Nucleotide ID:ENST00000289104Re-query CCDS DB by Protein ID:ENSP00000289104
Original member Current member EBI ENST00000423968.7 ENSP00000389682.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000423968.7Link to Ensembl Protein Viewer:ENSP00000389682.2Re-query CCDS DB by Nucleotide ID:ENST00000423968Re-query CCDS DB by Protein ID:ENSP00000389682
Original member Current member EBI ENST00000474559.1 ENSP00000418356.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000474559.1Link to Ensembl Protein Viewer:ENSP00000418356.1Re-query CCDS DB by Nucleotide ID:ENST00000474559Re-query CCDS DB by Protein ID:ENSP00000418356
Original member Current member NCBI NM_001085049.3 NP_001078518.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085049.3Link to Protein Sequence:NP_001078518.1Re-query CCDS DB by Nucleotide ID:NM_001085049Re-query CCDS DB by Protein ID:NP_001078518Link to BLAST:NP_001078518.1
Original member Current member NCBI NM_001252090.2 NP_001239019.1 Accepted alive Link to Nucleotide Sequence:NM_001252090.2Link to Protein Sequence:NP_001239019.1Re-query CCDS DB by Nucleotide ID:NM_001252090Re-query CCDS DB by Protein ID:NP_001239019Link to BLAST:NP_001239019.1
Original member Current member NCBI NM_012219.4 NP_036351.3 Accepted alive Link to Nucleotide Sequence:NM_012219.4Link to Protein Sequence:NP_036351.3Re-query CCDS DB by Nucleotide ID:NM_012219Re-query CCDS DB by Protein ID:NP_036351Link to BLAST:NP_036351.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078518.1 208 O14807-1 208 100% 0 0
NP_001239019.1 208 O14807-1 208 100% 0 0
NP_036351.3 208 O14807-1 208 100% 0 0

Chromosomal Locations for CCDS 3100.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138372884 138373076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138397324 138397477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138398469 138398568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138400534 138400613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138402170 138402269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGCAACCAGCGCCGTCCCCAGTGACAACCTCCCCACATACAAGCTGGTGGTGGTGGGGGATGGGGGTG
TGGGCAAAAGTGCCCTCACCATCCAGTTTTTCCAGAAGATCTTTGTGCCTGACTATGACCCCACCATTGA
AGACTCCTACCTGAAACATACGGAGATTGACAATCAATGGGCCATCTTGGACGTTCTGGACACAGCTGGG
CAGGAGGAATTCAGCGCCATGCGGGAGCAATACATGCGCACGGGGGATGGCTTCCTCATCGTCTACTCCG
TCACTGACAAGGCCAGCTTTGAGCACGTGGACCGCTTCCACCAGCTTATCCTGCGCGTCAAAGACAGGGA
GTCATTCCCGATGATCCTCGTGGCCAACAAGGTCGATTTGATGCACTTGAGGAAGATCACCAGGGAGCAA
GGAAAAGAAATGGCGACCAAACACAATATTCCGTACATAGAAACCAGTGCCAAGGACCCACCTCTCAATG
TCGACAAAGCCTTCCATGACCTCGTTAGAGTAATTAGGCAACAGATTCCGGAAAAAAGCCAGAAGAAGAA
GAAGAAAACCAAATGGCGGGGAGACCGGGCCACAGGCACCCACAAACTGCAATGTGTGATCTTGTGA

Translation (208 aa):
MATSAVPSDNLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAG
QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQ
GKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIRQQIPEKSQKKKKKTKWRGDRATGTHKLQCVIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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