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Report for CCDS3570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3570.1 Public Homo sapiens 4 CDKL2 24 110 108 CCDS HistoryNCBI Gene:8999Re-query CCDS DB by CCDS ID:3570.1Re-query CCDS DB by GeneID:8999See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429927.6 ENSP00000412365.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429927.6Link to Ensembl Protein Viewer:ENSP00000412365.2Re-query CCDS DB by Nucleotide ID:ENST00000429927Re-query CCDS DB by Protein ID:ENSP00000412365
Original member Current member NCBI NM_003948.5 NP_003939.1 Accepted alive Link to Nucleotide Sequence:NM_003948.5Link to Protein Sequence:NP_003939.1Re-query CCDS DB by Nucleotide ID:NM_003948Re-query CCDS DB by Protein ID:NP_003939Link to BLAST:NP_003939.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003939.1 493 Q92772 493 100% 0 0

Chromosomal Locations for CCDS 3570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 75581833 75581898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75596247 75596340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75596935 75597236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75598077 75598212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75600281 75600369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75603817 75603956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75605522 75605634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75607183 75607361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75614255 75614449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75625821 75625988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGAAAAATATGAAAACCTGGGTTTGGTTGGAGAAGGGAGTTATGGAATGGTGATGAAGTGTAGGAATA
AAGATACTGGAAGAATTGTGGCCATAAAGAAGTTCTTAGAAAGTGACGATGACAAAATGGTTAAAAAGAT
TGCAATGCGAGAAATCAAGTTACTAAAGCAACTTAGGCATGAAAACTTGGTGAATCTCTTGGAAGTGTGT
AAGAAAAAAAAACGATGGTACCTAGTCTTTGAATTTGTTGACCACACAATTCTTGATGACTTGGAGCTCT
TTCCAAATGGACTAGACTACCAAGTAGTTCAAAAGTATTTGTTTCAGATTATTAATGGAATTGGATTTTG
TCACAGTCACAATATCATACACAGAGATATAAAGCCAGAGAATATATTAGTCTCCCAGTCTGGCGTTGTC
AAGCTATGCGATTTTGGATTTGCGCGAACATTGGCAGCTCCTGGGGAGGTTTATACTGATTATGTGGCAA
CCCGATGGTACAGAGCTCCAGAACTATTGGTTGGTGATGTCAAGTATGGCAAGGCTGTTGATGTGTGGGC
CATTGGTTGTCTGGTAACTGAAATGTTCATGGGGGAACCCCTATTTCCTGGAGATTCTGATATTGATCAG
CTATATCATATTATGATGTGTTTAGGTAATCTAATTCCAAGGCATCAGGAGCTTTTTAATAAAAATCCTG
TGTTTGCTGGAGTAAGGTTGCCTGAAATCAAGGAAAGAGAACCTCTTGAAAGACGCTATCCTAAGCTCTC
TGAAGTGGTGATAGATTTAGCAAAGAAATGCTTACATATTGACCCCGACAAAAGACCCTTCTGTGCTGAG
CTCCTACACCATGATTTCTTTCAAATGGATGGATTTGCTGAGAGGTTTTCCCAAGAACTACAGTTAAAAG
TACAGAAAGATGCCAGAAATGTTTCTTTATCTAAAAAATCCCAAAACAGAAAGAAGGAAAAAGAAAAAGA
TGATTCCTTAGTTGAAGAAAGAAAAACACTTGTGGTACAGGATACCAATGCTGATCCCAAAATTAAGGAT
TATAAACTATTTAAAATAAAAGGCTCAAAAATTGATGGAGAAAAAGCTGAAAAAGGCAATAGAGCTTCAA
ATGCCAGCTGTCTCCATGACAGTAGGACAAGCCACAACAAAATAGTGCCTTCAACAAGCCTCAAAGACTG
CAGCAATGTCAGCGTGGACCACACAAGGAATCCAAGCGTGGCAATTCCCCCACTTACACACAATCTTTCT
GCAGTTGCTCCCAGCATTAATTCTGGAATGGGGACTGAGACTATACCAATTCAGGGTTACAGAGTGGATG
AGAAAACTAAGAAGTGTTCTATTCCATTTGTTAAACCGAACAGACATTCCCCATCAGGCATTTATAACAT
TAATGTGACCACATTAGTATCAGGACCTCCCCTGTCAGATGATTCAGGGGCTGATTTGCCTCAAATGGAA
CACCAGCACTGA

Translation (493 aa):
MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVC
KKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVV
KLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQ
LYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAE
LLHHDFFQMDGFAERFSQELQLKVQKDARNVSLSKKSQNRKKEKEKDDSLVEERKTLVVQDTNADPKIKD
YKLFKIKGSKIDGEKAEKGNRASNASCLHDSRTSHNKIVPSTSLKDCSNVSVDHTRNPSVAIPPLTHNLS
AVAPSINSGMGTETIPIQGYRVDEKTKKCSIPFVKPNRHSPSGIYNINVTTLVSGPPLSDDSGADLPQME
HQH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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