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Report for CCDS46727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46727.1 Public Homo sapiens 22 PHF21B 24 110 108 CCDS HistoryNCBI Gene:112885Re-query CCDS DB by CCDS ID:46727.1Re-query CCDS DB by GeneID:112885See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46727.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000629843.2 ENSP00000487086.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000629843.2Link to Ensembl Protein Viewer:ENSP00000487086.1Re-query CCDS DB by Nucleotide ID:ENST00000629843Re-query CCDS DB by Protein ID:ENSP00000487086
Original member Current member NCBI NM_001135862.3 NP_001129334.1 Accepted alive Link to Nucleotide Sequence:NM_001135862.3Link to Protein Sequence:NP_001129334.1Re-query CCDS DB by Nucleotide ID:NM_001135862Re-query CCDS DB by Protein ID:NP_001129334Link to BLAST:NP_001129334.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129334.1 489 Q96EK2-3 489 100% 0 0

Chromosomal Locations for CCDS 46727.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 44883086 44883304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44885426 44885529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44885863 44885938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44887963 44888121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44889760 44889782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44891306 44891360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44893457 44893533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44896032 44896083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44913822 44913962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44916280 44916630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 44920398 44920490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45008545 45008610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45009496 45009549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGAGCTGCAGAGCCGGCCCGAGGCGCTCGCCGTGGAACTCGCGCGCCACCAGAACGGCGACCTCAAGA
AGCAGCTCCACGAAAGGCAGCCGCGGATCGCCGCGCTCAGCGACAAACAAGCTTTGGGAACGATCACTGC
AGTGCCTGTCACGGGTCCTCAGGTCAGCTCCTTGCAGAGGTTGGCCGGGCAAGGAGCGGCAGTGCTACCT
CAGGTTAGGCCAAAGACTCTGATTCCAGACAGCCTCCCCGTTGCCCCGGGCCGGGACCGGCCACCCAAGC
AGCCCCCAACATTCCAGAAGGCCACCGTGGTCAGCGTCAAGAACCCCAGCCCAGCCCTCCCCACCGCCAA
CAACACTGTCAGCCATGTGCCAGCGCCCGGCAGCCAGCCCCAGGCCCTCGCCGAGCCCGCCGCCCTCGCC
TCTCCGCTGAGCAGTGCGGGGGTGGCCTACGCCATCATCTCCACCTCCCCCAGCAATGCCGCCGCCATGG
CCCCCAGCACCGCCGTGTCTGTGGTCAGTGACAGCATCAAAGTCCAGCCCCTCCTCATCAGTGCTGACAA
CAAGGTCATCATCATTCAGCCTCAAGTGCAGACGCAGCCCGAGAGCACGGCAGAGTCGCGGCCGCCCACA
GAGGAGCCATCTCAGGGAGCTCAGGCCACCAAAAAGAAGAAGGAAGACCGGCCCCCGACCCAGGAGAACC
CCGAGAAAATCGCCTTCATGGTAGCGCTAGGCCTGGTTACCACGGAACATTTGGAAGAAATCCAGAGCAA
GCGACAGGAGCGGAAGAGAAGAAGCACAGCCAACCCTGCCTACAGCGGCCTCCTGGAGACCGAGAGGAAA
CGGCTGGCCTCCAACTATCTCAACAACCCCCTGTTCCTCACAGCGAGAGCCAATGAGGACCCCTGCTGGA
AGAACGAGATCACCCACGATGAGCACTGTGCCGCCTGCAAGCGAGGGGCCAACCTGCAGCCCTGCGGCAC
CTGCCCGGGGGCCTACCACCTCAGCTGCCTGGAGCCGCCCCTCAAGACGGCGCCCAAGGGCGTGTGGGTG
TGCCCCAGGTGCCAGCAGAAGGCCTTAAAGAAAGACGAGGGTGTGCCCTGGACTGGGATGCTGGCCATCG
TGCACTCTTATGTCACCCACAAGACAGTCAAAGAAGAGGAGAAGCAGAAGCTGCTGCAACGAGGCAGTGA
GCTGCAGAACGAGCACCAGCAGCTGGAGGAGCGGGACCGGCGGCTGGCGTCAGCAGTGCAGAAATGCCTG
GAGTTGAAGACAAGCCTGCTGGCCCGCCAGAGGGGCACCCAGTCATCCCTGGACCGCCTGCGGGCCCTCC
TGAGACTGATACAGGGCGAGCAGCTGCTCCAGGTCACCATGACGACCACTAGCCCTGCCCCACTGCTGGC
CGGGCCCTGGACCAAGCCCTCAGTGGCAGCCACACACCCCACCGTCCAGCACCCCCAGGGCCACAACTGA

Translation (489 aa):
MELQSRPEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGTITAVPVTGPQVSSLQRLAGQGAAVLP
QVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALA
SPLSSAGVAYAIISTSPSNAAAMAPSTAVSVVSDSIKVQPLLISADNKVIIIQPQVQTQPESTAESRPPT
EEPSQGAQATKKKKEDRPPTQENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGLLETERK
RLASNYLNNPLFLTARANEDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWV
CPRCQQKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQNEHQQLEERDRRLASAVQKCL
ELKTSLLARQRGTQSSLDRLRALLRLIQGEQLLQVTMTTTSPAPLLAGPWTKPSVAATHPTVQHPQGHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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