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Report for CCDS73496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73496.1 Public Homo sapiens 12 BEST3 24 110 108 CCDS HistoryNCBI Gene:144453Re-query CCDS DB by CCDS ID:73496.1Re-query CCDS DB by GeneID:144453See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266661.8 ENSP00000266661.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000266661.8Link to Ensembl Protein Viewer:ENSP00000266661.4Re-query CCDS DB by Nucleotide ID:ENST00000266661Re-query CCDS DB by Protein ID:ENSP00000266661
Original member Current member EBI ENST00000551160.5 ENSP00000449377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000551160.5Link to Ensembl Protein Viewer:ENSP00000449377.1Re-query CCDS DB by Nucleotide ID:ENST00000551160Re-query CCDS DB by Protein ID:ENSP00000449377
Original member Current member NCBI NM_001282615.2 NP_001269544.1 Accepted alive Link to Nucleotide Sequence:NM_001282615.2Link to Protein Sequence:NP_001269544.1Re-query CCDS DB by Nucleotide ID:NM_001282615Re-query CCDS DB by Protein ID:NP_001269544Link to BLAST:NP_001269544.1
Original member Current member NCBI NM_001282616.2 NP_001269545.1 Accepted alive Link to Nucleotide Sequence:NM_001282616.2Link to Protein Sequence:NP_001269545.1Re-query CCDS DB by Nucleotide ID:NM_001282616Re-query CCDS DB by Protein ID:NP_001269545Link to BLAST:NP_001269545.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269544.1 72 Q8N1M1-4 72 100% 0 0
NP_001269545.1 72 Q8N1M1-4 72 100% 0 0

Chromosomal Locations for CCDS 73496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69684553 69684608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69693674 69693836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (219 nt):
ATGTTCCTCATCTCTAGCAGTGTTCACGGAAGCGACGAGCACGGGCGCCTGCTTAGAAGGACGCTGATGC
GCTACGTCAATCTCACCTCCCTGCTCATCTTTCGCTCGGTGAGCACTGCTGTGTACAAAAGATTTCCCAC
AATGGACCACGTGGTTGAAGCAGAAAGAACTGGCATGAAACCCATTCTGCCTTCAAGTTTTGAGATGCAG
AGCTTTTAG

Translation (72 aa):
MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAERTGMKPILPSSFEMQ
SF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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