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Report for CCDS14237.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14237.2 Public Homo sapiens X CFAP47 24 110 108 CCDS HistoryNCBI Gene:286464Re-query CCDS DB by CCDS ID:14237.2Re-query CCDS DB by GeneID:286464See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14237.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297866.9 ENSP00000297866.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297866.9Link to Ensembl Protein Viewer:ENSP00000297866.5Re-query CCDS DB by Nucleotide ID:ENST00000297866Re-query CCDS DB by Protein ID:ENSP00000297866
Original member Current member NCBI NM_152632.4 NP_689845.2 Accepted alive Link to Nucleotide Sequence:NM_152632.4Link to Protein Sequence:NP_689845.2Re-query CCDS DB by Nucleotide ID:NM_152632Re-query CCDS DB by Protein ID:NP_689845Link to BLAST:NP_689845.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689845.2 976 Q6ZTR5-1 976 100% 0 0

Chromosomal Locations for CCDS 14237.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 35919800 35920048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35926017 35926168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35941283 35941398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35948314 35948452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35951131 35951359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35951803 35951963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35953592 35953719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35955961 35956196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35966565 35966754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35967619 35967832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35970768 35970923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35971586 35971772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35971869 35971965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35975147 35975363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35975672 35975913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35989319 35989536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2931 nt):
ATGAACACCCAAAAGGGTTCCCTCACCATAAACGTCCACAGAGGTTCCCTCGCCATGAGCATCCAAAGGG
GTTCCCTCGTCCCCCGGGATATGGATAGCTCGGGTAGAGACATGCAGCTGCGGGTGATCCCGGCTGAGGT
GAAGTTCCTGGACACGATGGCCGGGAGGGTGTACCGCCTCCCGATTACTGTGCATAATATTTGCCGCTGG
AACCAGAAAATCCGATTTAAGGAGCCCGTCAAGCCACAGTTCAAACTGATGTTGACCAGTCTGGATAAAG
AACTTGCTTCTGGCCTTCAGATGACAGCTATGGTGGAATATCATCCTGATAAAGACGAAGACACTTTTGA
CCGGCTACTTATTTCAATAGAAAATAAAACAACAGAAATTCCTCTAATTGGGTTGATTCCATCCTGTCAA
TTGGAAATTGAATCAGTAGTTAATTTTGGCACACTGGTTGCCAATAGTAAAGTATATTCTAAAGAGATTA
CTATCACTAACCATGGCAAAGCTCCAGGCATATTTAAGGCAGAATACCACGGCCAATTACCCATCCTCAT
TTTTCCAACTAGTGGTATCGTGGATGCTAAGTCATCAATGGTTATTAAAGTAGATTTCTGTGCAGACCAG
CCAAGAATTGTAGATGAAGAGGCAATAGTGATTTTGCAAGGTCAACCTGAGATGCTCTTGAGTATCAAAG
CTCATGTGGTTGAGCAGATTATTGAATTATTAAGCATGAGTAGTGACAGAAGGCTGGAATGCATACACTT
TGGTCCTGTTTTCTTCGGATCATCAAAAATTAAACATGCACGTGTATACAATAATAGCCCAGAGCCCATA
AATTGGGTGGCCATCATACAAGATGATGCCGTGGGAGAAGAATTGGGTACAGATATTCAACAAAGAACAG
ATATTGCTTTAAATAATCTCACCTACATAAGAAAAATAAAGAACATAGATACTACTATCATTATCTCCTG
TCTTCCTAATGAAGGGACTTTACAACCTTATCAAAAGACTGTAATTACATTTTGTTTCACCCCAAAGCTA
ATGGCTGTTGGTAAAAAGGATATTGGACCTTCATACAGACAGGACTATGCTCTCTTTTTGAGATTTGAGT
CCGTAGGAAGTAAAGATGGATTTTTGAGAGATGATGACTATAAAACCATCAAAAGTGAACGATTTCAGAA
AGTGGAATTAGCACTGACAGGCACAGGACTTCCTGTTTTACTACAGTTTGATCCAGGACCAGTTCTTAAT
TTTAAACCTTGTTTCATGGGTGAACGTTCAGAAATTCAGTGCATCATAAAAAATCAATGCGAATTACTTC
CTGTGACGTACCACTTTAAAAAAACTGCAAATTTTGAAATTGATCCTGAAAAGGGCAAGATTACTGGAGG
GGGTATGGTGGATGTGATGTGTTCATTTGTTCCACATCAACTTGGAGTCTTCAAAGTGAAGCAGATGATA
GAGATTATTGGTTTAGTGGCAGAAGAAGATTTGCAATCTTTGTCGGTAAAATCTTTCCATCACGTATATT
TAGCTTTCAACAGCATCTGTAAAGCTTCCACCAAGAAAGTTGTGATGAAATTTGATCCTGGTATATTGCC
TTCGATCCGTAATCCCACGGGAAAGTTTGTGGTCAAAGACTTGGCAAAACGCAAGAATTATGCACCTGTA
GCAATGCTTCAATCAGCCATGACACGCACTCACAATCATCGCTCATGTGAAGAGCCAGTGAAGGATATGC
TATTAGCCTTTCCCAATGACCGAGCTGCAACTATCAGGTCTAAAGACCATCATAAACATTTCAGGCCAAT
TTTCACAAAAGTTCCAAGATTTAACTATGTGAATCATGATTTTGCATATACTACATTTGAAAAACAGCAA
AAGAAATTACATGAAAACTATTATGCAATGTATCTTAAATATTTAAGAAGTGTGCGCTTGCAGAAGAAAC
AAGCAGAGAGGGAGCGCATGTATTCATATGATGATACAGACATAGGCTTAGAGCCAGGATCAGGTCTAAA
GTCACCCTCACTCTCAGAAGCGGAAATAGAAGAGGAGCTGTCTTCAGCAGCAAATTCAATTAGAGCGAAT
CGATTGTTAACCACCAGGGGTATAGCATCTCAGGAGGAAGAGTCTGTGAGAAGAAAGGTTCTCAAAGGAC
TTAAATCAGAACCATCCACTCCACAAGAAAAACATGATTGCAGCTTAATGTTGACACCAAAGCAAATTCA
TCAAGTAATTGTTGGGCCTTCTGTCCTTAACTTTGGTAATATTTGTGTGAACTCTCCAAATACTCATCTA
CTTCATGTTATTAATATGCTACCTATGCATGTTTTGCTCCAGTTAGATACTGATTTAGAAGAACTTCAGA
AGACCAACCAATTTTCATACGTGATTCTACCTACATCCAGTACTTATATTTCAATGGTATTTGACTCTCC
CACCATTGGAAAATTTTGGAAGTCTTTCACCTTTACAGTGAACAATGTACCCAGTGGACACATCCTAGTG
GTGGCAGTTGTCCAGCCAGTAACACTTGAGCTATCTTCTAATGAGCTAGTATTGAGACCACGAGGCTTCT
TCATGAAAACATGTTTTCGGGGGACAGTTAGATTGTATAATCGTCAGAATTGTTGTGCTCAGTTTCAATG
GCAACCCGTAAACACAGGAAGAGGGATAGCATTTTCTATTTGTCCAGCTAAAGGCACTGTTGAAGCATAT
TCCTCACTGGAATGTGAAGTAACTTGGCAGCAGGGCTTCAGTTCTCCAGAAGAAGGAGAATTTATTCTTC
ATGTCTTTCAAGGAAACGCGTTGAAGCTAAAATGTGTTGCACATGTAATTATTTTCCTTGAACATGGTTT
TTGTTTTGAGGGCTATGAATTTGTTGGGTATACACTGGTGTATATAGTTACCTATATCTAG

Translation (976 aa):
MNTQKGSLTINVHRGSLAMSIQRGSLVPRDMDSSGRDMQLRVIPAEVKFLDTMAGRVYRLPITVHNICRW
NQKIRFKEPVKPQFKLMLTSLDKELASGLQMTAMVEYHPDKDEDTFDRLLISIENKTTEIPLIGLIPSCQ
LEIESVVNFGTLVANSKVYSKEITITNHGKAPGIFKAEYHGQLPILIFPTSGIVDAKSSMVIKVDFCADQ
PRIVDEEAIVILQGQPEMLLSIKAHVVEQIIELLSMSSDRRLECIHFGPVFFGSSKIKHARVYNNSPEPI
NWVAIIQDDAVGEELGTDIQQRTDIALNNLTYIRKIKNIDTTIIISCLPNEGTLQPYQKTVITFCFTPKL
MAVGKKDIGPSYRQDYALFLRFESVGSKDGFLRDDDYKTIKSERFQKVELALTGTGLPVLLQFDPGPVLN
FKPCFMGERSEIQCIIKNQCELLPVTYHFKKTANFEIDPEKGKITGGGMVDVMCSFVPHQLGVFKVKQMI
EIIGLVAEEDLQSLSVKSFHHVYLAFNSICKASTKKVVMKFDPGILPSIRNPTGKFVVKDLAKRKNYAPV
AMLQSAMTRTHNHRSCEEPVKDMLLAFPNDRAATIRSKDHHKHFRPIFTKVPRFNYVNHDFAYTTFEKQQ
KKLHENYYAMYLKYLRSVRLQKKQAERERMYSYDDTDIGLEPGSGLKSPSLSEAEIEEELSSAANSIRAN
RLLTTRGIASQEEESVRRKVLKGLKSEPSTPQEKHDCSLMLTPKQIHQVIVGPSVLNFGNICVNSPNTHL
LHVINMLPMHVLLQLDTDLEELQKTNQFSYVILPTSSTYISMVFDSPTIGKFWKSFTFTVNNVPSGHILV
VAVVQPVTLELSSNELVLRPRGFFMKTCFRGTVRLYNRQNCCAQFQWQPVNTGRGIAFSICPAKGTVEAY
SSLECEVTWQQGFSSPEEGEFILHVFQGNALKLKCVAHVIIFLEHGFCFEGYEFVGYTLVYIVTYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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