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Report for CCDS502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
502.1 Public Homo sapiens 1 ARTN 24 110 108 CCDS HistoryNCBI Gene:9048Re-query CCDS DB by CCDS ID:502.1Re-query CCDS DB by GeneID:9048See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000414809.7 ENSP00000387435.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414809.7Link to Ensembl Protein Viewer:ENSP00000387435.3Re-query CCDS DB by Nucleotide ID:ENST00000414809Re-query CCDS DB by Protein ID:ENSP00000387435
Original member Current member EBI ENST00000498139.6 ENSP00000436727.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498139.6Link to Ensembl Protein Viewer:ENSP00000436727.1Re-query CCDS DB by Nucleotide ID:ENST00000498139Re-query CCDS DB by Protein ID:ENSP00000436727
Original member Current member NCBI NM_001136215.2 NP_001129687.1 Accepted alive Link to Nucleotide Sequence:NM_001136215.2Link to Protein Sequence:NP_001129687.1Re-query CCDS DB by Nucleotide ID:NM_001136215Re-query CCDS DB by Protein ID:NP_001129687Link to BLAST:NP_001129687.1
Original member Current member NCBI NM_057090.3 NP_476431.2 Accepted alive Link to Nucleotide Sequence:NM_057090.3Link to Protein Sequence:NP_476431.2Re-query CCDS DB by Nucleotide ID:NM_057090Re-query CCDS DB by Protein ID:NP_476431Link to BLAST:NP_476431.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129687.1 228 Q5T4W7-3 228 100% 0 0
NP_476431.2 228 Q5T4W7-3 228 100% 0 0

Chromosomal Locations for CCDS 502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43935657 43935716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43936069 43936231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43936302 43936765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGGAACTTGGACTTGGAGGCCTCTCCACGCTGTCCCACTGCCCCTGGCCTAGGCAGCAGGCTCCACTTG
GTCTCTCCGCGCAGCCTGCCCTGTGGCCCACCCTGGCCGCTCTGGCTCTGCTGAGCAGCGTCGCAGAGGC
CTCCCTGGGCTCCGCGCCCCGCAGCCCTGCCCCCCGCGAAGGCCCCCCGCCTGTCCTGGCGTCCCCCGCC
GGCCACCTGCCGGGGGGACGCACGGCCCGCTGGTGCAGTGGAAGAGCCCGGCGGCCGCCGCCGCAGCCTT
CTCGGCCCGCGCCCCCGCCGCCTGCACCCCCATCTGCTCTTCCCCGCGGGGGCCGCGCGGCGCGGGCTGG
GGGCCCGGGCAGCCGCGCTCGGGCAGCGGGGGCGCGGGGCTGCCGCCTGCGCTCGCAGCTGGTGCCGGTG
CGCGCGCTCGGCCTGGGCCACCGCTCCGACGAGCTGGTGCGTTTCCGCTTCTGCAGCGGCTCCTGCCGCC
GCGCGCGCTCTCCACACGACCTCAGCCTGGCCAGCCTACTGGGCGCCGGGGCCCTGCGACCGCCCCCGGG
CTCCCGGCCCGTCAGCCAGCCCTGCTGCCGACCCACGCGCTACGAAGCGGTCTCCTTCATGGACGTCAAC
AGCACCTGGAGAACCGTGGACCGCCTCTCCGCCACCGCCTGCGGCTGCCTGGGCTGA

Translation (228 aa):
MELGLGGLSTLSHCPWPRQQAPLGLSAQPALWPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPA
GHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPV
RALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSFMDVN
STWRTVDRLSATACGCLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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